Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F52G3.5
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Query: F52G3.5 CE10862 status:Partially_confirmed TR:Q9GZH9 protein_id:AAF99973.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ShTK ShTK domain 63.6 1.4e-17 2
motilin_assoc Motilin/ghrelin-associated peptide 3.7 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
motilin_assoc 1/1 54 69 .. 1 16 [. 3.7 10
ShTK 1/2 332 366 .. 1 44 [] 31.5 6.3e-08
ShTK 2/2 377 415 .] 1 43 [. 39.7 2.1e-10
Alignments of top-scoring domains:
motilin_assoc: domain 1 of 1, from 54 to 69: score 3.7, E = 10
*->sgelgPedpaEpeeeE<-*
sg+l P++ +E+e eE
F52G3.5 54 SGSLSPLEQVEVEAEE 69
ShTK: domain 1 of 2, from 332 to 366: score 31.5, E = 6.3e-08
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
+C+ D + C ++ l C + + y++fm+ nC+kTC +C+
F52G3.5 332 NCT---DVLTGC--LTHL---CDRKG-YRQFMTNNCAKTCARCH 366
ShTK: domain 2 of 2, from 377 to 415: score 39.7, E = 2.1e-10
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfC<-*
+C+ D++sdC wa+ G+ C+++ Y++++ ++C k+C++C
F52G3.5 377 DCR---DRRSDCEEWAAEGF-CESSLYTTRQKLKFCGKSCKLC 415