Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F49C12.8
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  F49C12.8  CE03368  locus:rpn-7  status:Confirmed SW:Q20585 protein_id:CAA92512.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
PCI      PCI domain                                      76.5      2e-20   1
WSN      Domain of unknown function                       6.0        4.2   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PCI        1/1     310   379 ..     1    75 []    76.5    2e-20
WSN        1/1     392   410 .]     1    19 [.     6.0      4.2

Alignments of top-scoring domains:
PCI: domain 1 of 1, from 310 to 379: score 76.5, E = 2e-20
                   *->akhveeLrrkirelnLlqlaetyssapyssislselAellglsveev
                      ++h++++ r +r++++ q++      py++++++++A+ +g+s +++
    F49C12.8   310    SPHFNYYSRGMRHRAYEQFLT-----PYKTVRIDMMAKDFGVSRAFI 351

                   EkllsklIldgrihakIDqvngiveves<-*
                   +++l +lI++g+++++ID vng++ev++
    F49C12.8   352 DRELHRLIATGQLQCRIDAVNGVIEVNH    379

WSN: domain 1 of 1, from 392 to 410: score 6.0, E = 4.2
                   *->skLqtvienlsilaRVtNA<-*
                       + +  ++++++laRV+NA
    F49C12.8   392    KDGDILLNRIQKLARVINA    410



[DB home][top]