Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F49C12.8
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Query: F49C12.8 CE03368 locus:rpn-7 status:Confirmed SW:Q20585 protein_id:CAA92512.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PCI PCI domain 76.5 2e-20 1
WSN Domain of unknown function 6.0 4.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PCI 1/1 310 379 .. 1 75 [] 76.5 2e-20
WSN 1/1 392 410 .] 1 19 [. 6.0 4.2
Alignments of top-scoring domains:
PCI: domain 1 of 1, from 310 to 379: score 76.5, E = 2e-20
*->akhveeLrrkirelnLlqlaetyssapyssislselAellglsveev
++h++++ r +r++++ q++ py++++++++A+ +g+s +++
F49C12.8 310 SPHFNYYSRGMRHRAYEQFLT-----PYKTVRIDMMAKDFGVSRAFI 351
EkllsklIldgrihakIDqvngiveves<-*
+++l +lI++g+++++ID vng++ev++
F49C12.8 352 DRELHRLIATGQLQCRIDAVNGVIEVNH 379
WSN: domain 1 of 1, from 392 to 410: score 6.0, E = 4.2
*->skLqtvienlsilaRVtNA<-*
+ + ++++++laRV+NA
F49C12.8 392 KDGDILLNRIQKLARVINA 410