Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F48E8.1a
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Query: F48E8.1a CE01953 locus:lon-1 status:Confirmed SW:Q09566 protein_id:AAC46538.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SCP SCP-like extracellular protein 139.9 2.4e-38 1
SEC-C SEC-C motif 8.0 4 1
TB TB domain 4.3 8.1 1
ANATO Anaphylotoxin-like domain 1.0 8.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ANATO 1/1 160 169 .. 28 37 .] 1.0 8.7
SEC-C 1/1 159 173 .. 7 21 .] 8.0 4
SCP 1/1 85 208 .. 1 163 [] 139.9 2.4e-38
TB 1/1 232 254 .. 25 45 .] 4.3 8.1
Alignments of top-scoring domains:
ANATO: domain 1 of 1, from 160 to 169: score 1.0, E = 8.7
*->eCrkaFlqCC<-*
+C a + CC
F48E8.1a 160 GCNHAYKHCC 169
SEC-C: domain 1 of 1, from 159 to 173: score 8.0, E = 4
*->CGSGkkYkeCCgkfv<-*
CG ++ Yk+CCg++v
F48E8.1a 159 CGCNHAYKHCCGHYV 173
SCP: domain 1 of 1, from 85 to 208: score 139.9, E = 2.4e-38
*->LdaHNelRsqvAkGtyvakgnlPpAsnMpkLkWDdeLAalAqnwAnq
++HN++R++v pAs+M++L W+deLAa+Aq++A++
F48E8.1a 85 THEHNRYRRMV------------PASDMNMLYWSDELAASAQRHADT 119
mankgdCpgslsHspldrkcrntsrfgpyGENlawgsgssgsgadlgeia
C ++Hs ++ ++GEN++++ + + d
F48E8.1a 120 ------C--DFRHS---------RGRINVGENIWAAP--YSNYSD----- 145
aeeavdaWfnElkkd....YgynspntctdgsgcGHyTQmVWakttkiGC
a+ WfnE + +++ ++++++ ++cGHy Q+VWakt+ +GC
F48E8.1a 146 ---AISIWFNE-VHNprcgCNHAY------KHCCGHYVQVVWAKTNLVGC 185
avvrCgngggrd...nkvyvvCn<-*
+++rC + +g +++++ ++vC+
F48E8.1a 186 GFSRCRDVQGVWgrgHRNVFVCH 208
TB: domain 1 of 1, from 232 to 254: score 4.3, E = 8.1
*->eAWGtp..CElCPvpgtaefkeL<-*
+A G++++C CP+ a++++L
F48E8.1a 232 WASGDNgkCSNCPANAPACYQGL 254