Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F48E8.6
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Query: F48E8.6 CE02758 status:Partially_confirmed SW:Q09568 protein_id:AAC46543.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RNB RNB-like protein 558.3 4.9e-164 1
SRP19 SRP19 protein 7.4 1.5 1
Ribosomal_L19e Ribosomal protein L19e 4.9 2.9 1
OTCace Aspartate/ornithine carbamoyltransfera 4.7 2.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Ribosomal_L19e 1/1 26 45 .. 129 148 .] 4.9 2.9
SRP19 1/1 455 480 .. 78 104 .] 7.4 1.5
OTCace 1/1 528 541 .. 134 146 .. 4.7 2.8
RNB 1/1 220 607 .. 1 406 [] 558.3 4.9e-164
Alignments of top-scoring domains:
Ribosomal_L19e: domain 1 of 1, from 26 to 45: score 4.9, E = 2.9
*->naFkskrhLveYIkkhkadk<-*
n F + + eYI k+++d+
F48E8.6 26 NNFNPRKIFTEYISKEETDA 45
SRP19: domain 1 of 1, from 455 to 480: score 7.4, E = 1.5
*->dg.GLynidvktKekLlreIAkkikekr<-*
dg++ + ++k+K+ l IA+ ++kr
F48E8.6 455 DGnT--PFEIKEKTLMLHRIAQVLRQKR 480
OTCace: domain 1 of 1, from 528 to 541: score 4.7, E = 2.8
*->kVGkkiaE.FGltg<-*
+V+kkiaE+F++++
F48E8.6 528 EVAKKIAEnFPEHA 541
RNB: domain 1 of 1, from 220 to 607: score 558.3, E = 4.9e-164
*->enaeakegqlvvasikrerwpitslhPlGelveiLGnigdpeieida
++ +++e +l++a+i+ +w ++s ++ G+lv+ LG+ g+ ++e++
F48E8.6 220 SRPKDFERFLYTAKIT--DWRAESVYADGRLVKLLGMSGEIDTETER 264
iLrehdipledfskvveealklep.ewepaydLPateieeeelkkRrDLr
i +eh+i +++fs++++e l++++ e+ +++++ e+ +RrD+r
F48E8.6 265 IVYEHQIDHREFSDECLESLPITTaEN--------WKVPDAEFEYRRDFR 306
dlliftIDpegarDiDDAlsvkkldngg.q...gyeLgVHIADVthyVkp
+ +ftIDp++arD+DDAl++k++d++++++++g+e+gVHIADVt ++k+
F48E8.6 307 SDIVFTIDPKTARDLDDALHAKHIDDCDgKgtpGLEIGVHIADVTFFLKE 356
gSsLDkEAakRgtsvYLPqkviPMLPeeLsnglCSLkpnedRlAlScemt
g++LDk+A +Rg+s+YL q+viPMLP++L+++lCSL+p++dRl +S +++
F48E8.6 357 GTELDKWASERGNSTYLSQTVIPMLPRILCEQLCSLNPGVDRLSFSTVFK 406
lDssGadseitdveigkSVIrskarltYeevdeiLedp.kdelvdevkni
+++++ e++dv++g+SVIrs+++l+Ye++++++e+p+kd+++de+++i
F48E8.6 407 MSYEA---ELYDVWFGRSVIRSRVKLAYEHAQDFIENPeKDFTCDELPDI 453
.d.etseplveslrllselakllrkkRlkrGaidldlpetkfdldedNag
+d++t+++++e+ ++l+++a++lr+kR+++Ga++++lp +kf lded +
F48E8.6 454 sDgNTPFEIKEKTLMLHRIAQVLRQKREDSGALRIELPRLKFALDED--K 501
evevieisvsieertdahslveEfMllANeaVArhlyehfipgallRrHp
+++ + i +e d+++lveEfMllAN++VA++++e+f+++allR+Hp
F48E8.6 502 KPQGVSI----YEIKDSNKLVEEFMLLANMEVAKKIAENFPEHALLRNHP 547
pPslekleslvefltelglkkksteetaatvtskelatllkkckdrpsee
pP+++++++ e++ ++g+ ++++ ts l t+l+k++++++++
F48E8.6 548 PPKEKMIKDVAEQCARIGFPLDGR-------TSGLLSTSLRKYQGKSRLD 590
lletlllrslkrakYsv<-*
++ +++ sl+++ +++
F48E8.6 591 MCIRQVISSLTIKPMQQ 607