Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F48E3.8a
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Query: F48E3.8a CE31173 status:Partially_confirmed TN:AAM69112 protein_id:AAM69112.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
EB EB module 503.3 1.8e-147 36
Polysacc_deacet Polysaccharide deacetylase 14.4 0.0063 1
Urotensin_II Urotensin II 10.0 0.089 3
Glu_synth_NTN Glutamate synthase amidotransferase d 9.1 0.0099 1
Cohesin Cohesin domain 6.1 3.8 2
CW_binding_1 Putative cell wall binding repeat 5.8 5.4 1
RNA_pol_Rpc34 RNA polymerase Rpc34 subunit 5.4 1.6 1
DX DX module 5.2 1.8 1
VSP Giardia variant-specific surface prot 5.2 1.2 1
Herpes_PAP Herpesvirus polymerase accessory prot 4.7 0.62 1
tsp_1 Thrombospondin type 1 domain 4.5 7.6 1
disintegrin Disintegrin 2.8 7 1
lef-2 lef-2 2.7 9.6 1
Bunya_NS-S_2 Bunyavirus nonstructural protein NS-S 1.3 8.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
EB 1/36 40 72 .. 26 63 .] 0.5 2e+02
Herpes_PAP 1/1 74 96 .. 1 25 [. 4.7 0.62
EB 2/36 85 141 .. 1 63 [] 36.1 5.1e-08
Bunya_NS-S_2 1/1 148 158 .. 472 482 .] 1.3 8.5
EB 3/36 160 207 .. 10 63 .] 32.9 3.8e-07
EB 4/36 211 267 .. 1 63 [] 45.3 1.7e-10
EB 5/36 287 338 .. 1 63 [] 58.7 4e-14
EB 6/36 343 379 .. 20 63 .] 37.5 2.1e-08
EB 7/36 424 463 .. 18 63 .] 26.4 2.1e-05
EB 8/36 465 496 .. 16 49 .. 11.2 0.26
Cohesin 1/2 536 546 .. 132 142 .] 1.2 69
EB 9/36 498 550 .. 1 63 [] 41.3 2e-09
Cohesin 2/2 548 561 .. 1 15 [. 4.8 8
EB 10/36 554 581 .. 18 47 .. 0.9 1.7e+02
EB 11/36 583 637 .. 1 63 [] 38.2 1.4e-08
EB 12/36 642 679 .. 19 63 .] 19.5 0.0015
Glu_synth_NTN 1/1 710 719 .. 1 10 [. 9.1 0.0099
EB 13/36 684 721 .. 19 63 .] 30.1 2.1e-06
disintegrin 1/1 738 748 .. 57 67 .. 2.8 7
EB 14/36 744 768 .. 33 63 .] 17.1 0.007
DX 1/1 769 792 .. 60 87 .. 5.2 1.8
CW_binding_1 1/1 843 851 .. 12 20 .] 5.8 5.4
EB 15/36 800 852 .. 1 63 [] 49.9 9.6e-12
EB 16/36 897 920 .. 38 63 .] 5.8 7.5
EB 17/36 951 962 .. 49 63 .] 4.3 20
EB 18/36 964 1022 .. 1 63 [] 43.7 4.4e-10
RNA_pol_Rpc34 1/1 1034 1050 .. 140 156 .. 5.4 1.6
EB 19/36 1114 1153 .. 17 63 .] 25.4 3.8e-05
lef-2 1/1 1151 1159 .. 171 179 .] 2.7 9.6
EB 20/36 1162 1193 .. 27 63 .] 21.3 0.0005
EB 21/36 1196 1235 .. 17 63 .] 32.9 3.7e-07
EB 22/36 1259 1297 .. 18 63 .] 3.4 33
EB 23/36 1319 1343 .. 33 63 .] 16.9 0.0077
EB 24/36 1350 1384 .. 22 63 .] 5.7 8.3
EB 25/36 1416 1476 .. 1 63 [] 28.5 5.9e-06
EB 26/36 1481 1520 .. 18 63 .] 28.2 7e-06
EB 27/36 1532 1557 .. 32 63 .] -2.6 1.4e+03
EB 28/36 1575 1607 .. 30 63 .] 5.3 10
EB 29/36 1624 1654 .. 32 63 .] 0.6 2e+02
EB 30/36 1668 1700 .. 30 63 .] 4.0 23
tsp_1 1/1 1691 1700 .. 44 53 .] 4.5 7.6
Urotensin_II 1/3 1748 1759 .. 1 12 [] 3.1 20
EB 31/36 1747 1771 .. 33 63 .] 10.7 0.36
EB 32/36 1778 1815 .. 20 63 .] 18.1 0.0036
EB 33/36 1858 1882 .. 33 63 .] 21.0 0.00063
EB 34/36 1900 1929 .. 22 58 .. 15.6 0.018
VSP 1/1 1922 1937 .. 1 18 [. 5.2 1.2
EB 35/36 1954 1984 .. 27 63 .] 34.5 1.4e-07
Urotensin_II 2/3 2000 2011 .. 1 12 [] 2.5 32
EB 36/36 1999 2059 .. 1 47 [. 6.6 4.8
Urotensin_II 3/3 2049 2060 .. 1 12 [] 9.5 0.14
Polysacc_deacet 1/1 2119 2206 .. 1 109 [. 14.4 0.0063
Alignments of top-scoring domains:
EB: domain 1 of 36, from 40 to 72: score 0.5, E = 2e+02
*->gCeaseQCqggwpgSvCingmCeCpegvpkttrvngvC<-*
+C+++ QC g p + C ++C+C +g + + C
F48E3.8a 40 TCSYDNQCAGY-PLAIC-HSVCQCVKG---ALNTGTTC 72
Herpes_PAP: domain 1 of 1, from 74 to 96: score 4.7, E = 0.62
*->vtAsDinmefSsaCVhGQdIVREsG<-*
As + + S+aC GQ +RE G
F48E3.8a 74 --ASSTAIQTSVACPAGQTYIREAG 96
EB: domain 2 of 36, from 85 to 141: score 36.1, E = 5.1e-08
*->ClsgqVlin..gqCvakelnkvnpGesgCeaseQCqggwpgSvCing
C++gq+ i + g C + + pGe C++s+QC++ +pg++C +
F48E3.8a 85 CPAGQTYIReaGVC----MTVQQPGE-PCQYSQQCSALEPGAYCLKM 126
mCeCpegvpkttrvngvC<-*
+CeC g ++ + C
F48E3.8a 127 RCECVYG---MKKSSNGC 141
Bunya_NS-S_2: domain 1 of 1, from 148 to 158: score 1.3, E = 8.5
*->slaeghivvsp<-*
++++ghi++s+
F48E3.8a 148 CKERGHIFISE 158
EB: domain 3 of 36, from 160 to 207: score 32.9, E = 3.8e-07
*->gqCvakelnkvnpGesgCeaseQCqggwpgSvCingmCeCpegvpkt
g+C pG++gC+++ QC+g p+++C ++C+Cp++
F48E3.8a 160 GEC----REVFPPGGKGCSHNLQCSGAYPDATCFMQTCTCPPN--LP 200
trvngvC<-*
++ +g C
F48E3.8a 201 VAADGTC 207
EB: domain 4 of 36, from 211 to 267: score 45.3, E = 1.7e-10
*->ClsgqVlin..gqCvakelnkvnpGesgCeaseQCqggwpgSvCing
C+ +qV + +g+C l+ + pG+ +C++s QCq+ g vC+ +
F48E3.8a 211 CPNNQVYSGvtGEC----LPEKQPGQ-DCIYSSQCQASFGGLVCDKN 252
mCeCpegvpkttrvngvC<-*
+C+Cp+g ++++ +C
F48E3.8a 253 TCRCPNG---LVFDGLKC 267
EB: domain 5 of 36, from 287 to 338: score 58.7, E = 4e-14
*->ClsgqVlingqCvakelnkvnpGesgCeaseQCqggwpgSvCingmC
C+sg V++ g+C +++v++G+ C+a+ QC g S C++g+C
F48E3.8a 287 CPSGIVEVAGRC----VKQVSIGQ-PCVANAQCNFG---SFCQSGTC 325
eCpegvpkttrvngvC<-*
+Cp+g + ++ +C
F48E3.8a 326 QCPPG---FYVQDEQC 338
EB: domain 6 of 36, from 343 to 379: score 37.5, E = 2.1e-08
*->vnpGesgCeaseQCqggwpgSvCingmCeCpegvpkttrvngvC<-*
+ p e +C+++e C+ g SvC ng+C Cp + ++ ng C
F48E3.8a 343 SEPNE-SCQNNEKCTKG---SVCYNGKCSCPRN---HELINGHC 379
EB: domain 7 of 36, from 424 to 463: score 26.4, E = 2.1e-05
*->nkvnpGesgCe.aseQCqggwpgSvCingmCeCpegvpkttrvngvC
++v +G+ +C++ ++ C gg SvC g+C Cp g t+ ngvC
F48E3.8a 424 DTVPIGS-ACVrIGVTCDGG---SVCVAGICVCPLG---KTPRNGVC 463
<-*
F48E3.8a - -
EB: domain 8 of 36, from 465 to 496: score 11.2, E = 0.26
*->elnkvnpGesgCeaseQCqggwpgSvCi..ngmCeC<-*
e++ + pG +C++ e+C+ S+C ++ ++CeC
F48E3.8a 465 EHVAARPGT-SCQNEEECVDH---SYCSpeTNKCEC 496
[output cut off at A = 10 top alignments]