hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F46E10.1
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Query:  F46E10.1  CE20812   long-chain-fatty-acid-CoA ligase status:Partially_confirmed TR:Q9UAV8 protein_id:AAD14712.1

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N
--------    -----------                                 -----    ------- ---
AMP-binding AMP-binding enzyme                          415.9   3.7e-121   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
AMP-binding   1/1      95   534 ..     1   373 []   415.9 3.7e-121

Alignments of top-scoring domains:
AMP-binding: domain 1 of 1, from 95 to 534: score 415.9, E = 3.7e-121
                   *->TYrELderanrlAaaLralGvgpGdrVaillpnspelvvailAvlka
                      TY+++ + a+ lA +L++lG+++Gdr++i+ pn+ e+  + +A + a
    F46E10.1    95    TYSQVATDAENLACGLLHLGLKKGDRIGIWGPNTYEWTTTQFASALA 141

                   GaayvPldpsypaerlayiledsgakllltddallarl............
                   G++ v ++psy  e+l+y +e +g+++l+t ++++      + ++  +++
    F46E10.1   142 GMVLVNINPSYQSEELRYAIEKVGIRALITPPGFKKSNyyqsikdilpev 191

                   ..................................................
                   + +++++++ ++   +        +++++  +++ + +++ + +++++
    F46E10.1   192 tlkepgksgitsrnftcfqhlimfdeedkiypgawkytdvmkmgteedrh 241

                   s.e.p.ppvdpddlAyiiYTSGTTGkPKGVmltHrnlvnlvaala.rf.l
                     ++ +++++pdd + i+YTSGTTG+PKG+ ltH+n++n++  ++ r ++
    F46E10.1   242 HlSkIeRETQPDDSLNIQYTSGTTGQPKGATLTHHNVLNNAFFVGlRAgY 291

                   .pddaervlllapplyhfdgsvwelfgpLlaGatlvlvpkftryrdp.al
                   ++    ++++ ++plyh++g+v++++++L +  t+v++ + ++   + a
    F46E10.1   292 sEKK--TIICIPNPLYHCFGCVMGVLAALTHLQTCVFPAPSFD---AlAA 336

                   ldliekykvTvlflvPtllrlllaape....dlssLrlvlsgGealppel
                   l++i ++k+T+l+++Pt++  + ++pe  + +  s+r  + +G+++p +l
    F46E10.1   337 LQAIHEEKCTALYGTPTMFIDMINHPEyanyNYDSIRSGFIAGAPCPITL 386

                   lrrlrerfgsggvrlvngYGpTEttvvatanppg.d....pgsiGrPlpg
                   +rrl +  +  ++ +  +YG TEt++v++++  +++++ +  s+G+ +++
    F46E10.1   387 CRRLVQDMH--MTDMQVCYGTTETSPVSFMSTRDdPpeqrIKSVGHIMDH 434

                   vevyvlDeegrpvppGevGELyirGwpgvarGYlnrPelTaerFvadgwg
                    e+ ++D +  +vp G+ GE+ +rG  +v+r Y+n +e T++ +++d w
    F46E10.1   435 LEAAIVDKRNCIVPRGVKGEVIVRG-YSVMRCYWNSEEQTKKEITQDRW- 482

                   RmYrTGDlarwdpDGyleilGRiDdqvKirGerIepgEiEavLlehPgVa
                     Y+TGD+a+++++G++ i+GR++d++ ++Ge+I+p+E+E+ L +h  V+
    F46E10.1   483 --YHTGDIAVMHDNGTISIVGRSKDMIVRGGENIYPTEVEQFLFKHQSVE 530

                   eAaV<-*
                   ++ +
    F46E10.1   531 DVHI    534

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