Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F46C3.3
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Query: F46C3.3 CE31518 locus:hum-4 myosin like status:Partially_confirmed TR:Q20456 protein_id:CAA91469.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MyTH4 MyTH4 domain 383.1 2.7e-111 2
myosin_head Myosin head (motor domain) 149.1 1.3e-42 4
IQ IQ calmodulin-binding motif 43.6 1.9e-10 2
FUR Ferric uptake regulator family 4.7 7.1 1
Got1 Got1-like family 4.7 4.7 1
Desulfoferrodox Desulfoferrodoxin 4.5 1.7 1
IGPD Imidazoleglycerol-phosphate dehydrata 3.8 2.5 1
KdpC K+-transporting ATPase, c chain 2.6 5.2 1
Cation_ATPase_C Cation transporting ATPase, C-terminu 2.6 9.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Desulfoferrodox 1/1 176 191 .. 1 17 [. 4.5 1.7
myosin_head 1/4 406 422 .. 145 161 .. 0.6 11
KdpC 1/1 589 598 .. 185 194 .] 2.6 5.2
Cation_ATPase_C 1/1 600 617 .. 179 196 .] 2.6 9.3
myosin_head 2/4 449 657 .. 188 421 .. 97.3 1.2e-27
Got1 1/1 786 796 .. 56 66 .. 4.7 4.7
myosin_head 3/4 694 796 .. 457 569 .. 34.0 2.4e-09
myosin_head 4/4 825 853 .. 626 655 .. 20.6 1.8e-05
IQ 1/2 940 960 .. 1 21 [] 17.5 0.005
IQ 2/2 963 983 .. 1 21 [] 27.4 7.4e-06
IGPD 1/1 989 998 .. 139 148 .] 3.8 2.5
FUR 1/1 1154 1178 .. 100 124 .] 4.7 7.1
MyTH4 1/2 1124 1233 .. 1 118 [] 182.9 5e-51
MyTH4 2/2 2398 2512 .. 1 118 [] 202.3 7.6e-57
Alignments of top-scoring domains:
Desulfoferrodox: domain 1 of 1, from 176 to 191: score 4.5, E = 1.7
*->klmvekttDwakEKHVP<-*
l++e t+ +k+KHVP
F46C3.3 176 FLLSE-TAEKFKKKHVP 191
myosin_head: domain 1 of 4, from 406 to 422: score 0.6, E = 11
*->AFGNAKTtRNNNSSRFG<-*
+FG AKT++N+ +RFG
F46C3.3 406 SFGCAKTLKNDEATRFG 422
KdpC: domain 1 of 1, from 589 to 598: score 2.6, E = 5.2
*->leLNLALDkl<-*
+eLN ALD++
F46C3.3 589 IELNAALDNR 598
Cation_ATPase_C: domain 1 of 1, from 600 to 617: score 2.6, E = 9.3
*->sflvfildElrKfikRrr<-*
sf +i++El K++ r
F46C3.3 600 SFAMMIYEELFKWVLNRI 617
myosin_head: domain 2 of 4, from 449 to 657: score 97.3, E = 1.2e-27
*->RVvyQtegERNFHIFYQLLaGasqqnlkkeLkLtndpedYhYLnqgg
RV+ Q +gERNF IFY + G+s++ +k +++ + +++Y+nqg+
F46C3.3 449 RVISQKPGERNFNIFYEVYHGLSDE-MKAKFGIK-GLQKFFYINQGN 493
evkpcytvdGiDDsegnveeFketrkAmdilGftdeeqrsIFrivAaILh
+ + D+ +Fk++++A+ +lGf+d+ +sI++i++ ILh
F46C3.3 494 -----SSENIQHDV----NRFKHLESALHVLGFSDDHCMSIYKIISTILH 534
lGNikFkqrrkeeaaipddnna.dtkalekaaeLlGvdatelekALlsrr
+GNi+F+ +r+ +++ d+ + + ++l+ +a+Ll vd L+++
F46C3.3 535 IGNIYFRTKRNP-NVEQDVVEIgNLAELKWIAFLLEVDFDQ----LVKFL 579
iktGtegrkStvtkpqnveQAsyARDALAKalYsRLFdWIVnrINktLdf
+ t ++g St+ + A + RD++A +Y+ LF+W nrI L+
F46C3.3 580 LPTSEDG--STIELNA----ALDNRDSFAMMIYEELFKWVLNRIG--LQL 621
kakegqdasfIGVLDIyGFEIFekNSFEQLCINYvNEK<-*
k + + + +I +LD yGFE ++N+ E + IN vNE+
F46C3.3 622 KCSLH--TGVISILDHYGFEKYNNNGVEEFLINSVNER 657
Got1: domain 1 of 1, from 786 to 796: score 4.7, E = 4.7
*->PllGmilEsyG<-*
P++G+++EsyG
F46C3.3 786 PIIGLLFESYG 796
myosin_head: domain 3 of 4, from 694 to 796: score 34.0, E = 2.4e-09
*->cIDLIEkKsPpGILsLLDEeClfPkaqSGtDqtFldKLystfskhpa
+++L+ kK P G+LsLL +eC+fPk+ t +t+l+ ++ ++ +
F46C3.3 694 TVELLFKK-PYGLLSLLTDECKFPKG---THETYLEHCNLNHTDRS- 735
hfekfsPrfrqkksgahFiikHYAGdVeYnvegFleKNKDpLfddlisll
+ ++r+k+ +F ++H G+ Ynv++F NK ++ ++l+
F46C3.3 736 AYG----KARNKER-LEFGVRHCIGTTWYNVTDFFARNKRIISLSAVQLM 780
ksSsnpllaeLFpdee<-*
+ S+np++ LF++++
F46C3.3 781 RNSKNPIIGLLFESYG 796
myosin_head: domain 4 of 4, from 825 to 853: score 20.6, E = 1.8e-05
*->nLPHFvRCIkPNekKkagvfDaslVlhQLr<-*
+ +HFvRCIk N++ ++ +fD +lV Q +
F46C3.3 825 H-VHFVRCIKSNNERQSTKFDIPLVNRQIK 853
IQ: domain 1 of 2, from 940 to 960: score 17.5, E = 0.005
*->rraaikIQaawRGylaRkryk<-*
+aai+IQ+ + ++a+k yk
F46C3.3 940 GDAAIIIQKNMKSFVAQKVYK 960
IQ: domain 2 of 2, from 963 to 983: score 27.4, E = 7.4e-06
*->rraaikIQaawRGylaRkryk<-*
r+a+ik+Q+ RG++aR+ y
F46C3.3 963 RAAIIKLQSGLRGWKARRDYI 983
[output cut off at A = 10 top alignments]