Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F46C3.3
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Query:  F46C3.3  CE31518  locus:hum-4 myosin like status:Partially_confirmed TR:Q20456 protein_id:CAA91469.2

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
MyTH4           MyTH4 domain                            383.1   2.7e-111   2
myosin_head     Myosin head (motor domain)              149.1    1.3e-42   4
IQ              IQ calmodulin-binding motif              43.6    1.9e-10   2
FUR             Ferric uptake regulator family            4.7        7.1   1
Got1            Got1-like family                          4.7        4.7   1
Desulfoferrodox Desulfoferrodoxin                         4.5        1.7   1
IGPD            Imidazoleglycerol-phosphate dehydrata     3.8        2.5   1
KdpC            K+-transporting ATPase, c chain           2.6        5.2   1
Cation_ATPase_C Cation transporting ATPase, C-terminu     2.6        9.3   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Desulfoferrodox   1/1     176   191 ..     1    17 [.     4.5      1.7
myosin_head       1/4     406   422 ..   145   161 ..     0.6       11
KdpC              1/1     589   598 ..   185   194 .]     2.6      5.2
Cation_ATPase_C   1/1     600   617 ..   179   196 .]     2.6      9.3
myosin_head       2/4     449   657 ..   188   421 ..    97.3  1.2e-27
Got1              1/1     786   796 ..    56    66 ..     4.7      4.7
myosin_head       3/4     694   796 ..   457   569 ..    34.0  2.4e-09
myosin_head       4/4     825   853 ..   626   655 ..    20.6  1.8e-05
IQ                1/2     940   960 ..     1    21 []    17.5    0.005
IQ                2/2     963   983 ..     1    21 []    27.4  7.4e-06
IGPD              1/1     989   998 ..   139   148 .]     3.8      2.5
FUR               1/1    1154  1178 ..   100   124 .]     4.7      7.1
MyTH4             1/2    1124  1233 ..     1   118 []   182.9    5e-51
MyTH4             2/2    2398  2512 ..     1   118 []   202.3  7.6e-57

Alignments of top-scoring domains:
Desulfoferrodox: domain 1 of 1, from 176 to 191: score 4.5, E = 1.7
                   *->klmvekttDwakEKHVP<-*
                       l++e t+  +k+KHVP
     F46C3.3   176    FLLSE-TAEKFKKKHVP    191

myosin_head: domain 1 of 4, from 406 to 422: score 0.6, E = 11
                   *->AFGNAKTtRNNNSSRFG<-*
                      +FG AKT++N+  +RFG
     F46C3.3   406    SFGCAKTLKNDEATRFG    422

KdpC: domain 1 of 1, from 589 to 598: score 2.6, E = 5.2
                   *->leLNLALDkl<-*
                      +eLN ALD++
     F46C3.3   589    IELNAALDNR    598

Cation_ATPase_C: domain 1 of 1, from 600 to 617: score 2.6, E = 9.3
                   *->sflvfildElrKfikRrr<-*
                      sf  +i++El K++  r
     F46C3.3   600    SFAMMIYEELFKWVLNRI    617

myosin_head: domain 2 of 4, from 449 to 657: score 97.3, E = 1.2e-27
                   *->RVvyQtegERNFHIFYQLLaGasqqnlkkeLkLtndpedYhYLnqgg
                      RV+ Q +gERNF IFY  + G+s++ +k +++ +    +++Y+nqg+
     F46C3.3   449    RVISQKPGERNFNIFYEVYHGLSDE-MKAKFGIK-GLQKFFYINQGN 493

                   evkpcytvdGiDDsegnveeFketrkAmdilGftdeeqrsIFrivAaILh
                        +  +   D+     +Fk++++A+ +lGf+d+  +sI++i++ ILh
     F46C3.3   494 -----SSENIQHDV----NRFKHLESALHVLGFSDDHCMSIYKIISTILH 534

                   lGNikFkqrrkeeaaipddnna.dtkalekaaeLlGvdatelekALlsrr
                   +GNi+F+ +r+  +++ d+ + +  ++l+ +a+Ll vd       L+++
     F46C3.3   535 IGNIYFRTKRNP-NVEQDVVEIgNLAELKWIAFLLEVDFDQ----LVKFL 579

                   iktGtegrkStvtkpqnveQAsyARDALAKalYsRLFdWIVnrINktLdf
                   + t ++g  St+  +     A + RD++A  +Y+ LF+W  nrI   L+
     F46C3.3   580 LPTSEDG--STIELNA----ALDNRDSFAMMIYEELFKWVLNRIG--LQL 621

                   kakegqdasfIGVLDIyGFEIFekNSFEQLCINYvNEK<-*
                   k + +  + +I +LD yGFE  ++N+ E + IN vNE+
     F46C3.3   622 KCSLH--TGVISILDHYGFEKYNNNGVEEFLINSVNER    657

Got1: domain 1 of 1, from 786 to 796: score 4.7, E = 4.7
                   *->PllGmilEsyG<-*
                      P++G+++EsyG
     F46C3.3   786    PIIGLLFESYG    796

myosin_head: domain 3 of 4, from 694 to 796: score 34.0, E = 2.4e-09
                   *->cIDLIEkKsPpGILsLLDEeClfPkaqSGtDqtFldKLystfskhpa
                      +++L+ kK P G+LsLL +eC+fPk+   t +t+l+ ++ ++   +
     F46C3.3   694    TVELLFKK-PYGLLSLLTDECKFPKG---THETYLEHCNLNHTDRS- 735

                   hfekfsPrfrqkksgahFiikHYAGdVeYnvegFleKNKDpLfddlisll
                    +     ++r+k+   +F ++H  G+  Ynv++F   NK  ++   ++l+
     F46C3.3   736 AYG----KARNKER-LEFGVRHCIGTTWYNVTDFFARNKRIISLSAVQLM 780

                   ksSsnpllaeLFpdee<-*
                   + S+np++  LF++++
     F46C3.3   781 RNSKNPIIGLLFESYG    796

myosin_head: domain 4 of 4, from 825 to 853: score 20.6, E = 1.8e-05
                   *->nLPHFvRCIkPNekKkagvfDaslVlhQLr<-*
                      + +HFvRCIk N++ ++ +fD +lV  Q +
     F46C3.3   825    H-VHFVRCIKSNNERQSTKFDIPLVNRQIK    853

IQ: domain 1 of 2, from 940 to 960: score 17.5, E = 0.005
                   *->rraaikIQaawRGylaRkryk<-*
                       +aai+IQ+  + ++a+k yk
     F46C3.3   940    GDAAIIIQKNMKSFVAQKVYK    960

IQ: domain 2 of 2, from 963 to 983: score 27.4, E = 7.4e-06
                   *->rraaikIQaawRGylaRkryk<-*
                      r+a+ik+Q+  RG++aR+ y
     F46C3.3   963    RAAIIKLQSGLRGWKARRDYI    983

	[output cut off at A = 10 top alignments]


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