Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F45E6.3
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Query: F45E6.3 CE17829 Probable rabGAP domains status:Partially_confirmed TR:Q20436 protein_id:CAA92181.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TBC TBC domain 52.5 2.5e-14 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TBC 1/2 213 254 .. 172 219 .. 24.6 3.1e-06
TBC 2/2 350 419 .. 258 341 .] 28.0 3.2e-07
Alignments of top-scoring domains:
TBC: domain 1 of 2, from 213 to 254: score 24.6, E = 3.1e-06
*->rlLvaYswknpqehlgYvQGMnvilspLLlflkhgvdldeideeqAF
r+L Y+ np ++YvQGMn++++p++++++ d de+ A+
F45E6.3 213 RILFIYAKLNPG--VQYVQGMNELVAPIYYVFA----NDADDEWAAY 253
w<-*
+
F45E6.3 254 A 254
TBC: domain 2 of 2, from 350 to 419: score 28.0, E = 3.2e-07
*->eLyshlkkkenktgsgkKknllaldltllifafpwfLtlFarelPle
eL +hl + l++++ ++af+w+ +l + e+Pl
F45E6.3 350 ELHKHLTLT--------------LEIKPQFYAFRWLSLLLSQEFPLP 382
ivlrIwDilftyYlgshflifvalAiLkllkskllkh<-*
+v+++wD lf++ + + +l v+lA + l ++ l+
F45E6.3 383 DVITLWDALFSDPQRFALLQYVCLAMMELKREPLING 419