Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F42G9.6a
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F42G9.6a CE30791 status:Partially_confirmed TN:AAM29694 protein_id:AAM29694.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Lipase3_N Lipase 3 N-terminal region 177.4 2.3e-49 1
Lipase_3 Lipase (class 3) 127.1 3.4e-37 1
MtN3_slv MtN3/saliva family 6.6 2.2 1
DC1 DC1 domain 4.8 4.4 1
OadB_MmdB Na+-transporting methylmalonyl-CoA/oxalo 1.8 6.3 1
NiFeSe_Hases Nickel-dependent hydrogenase 0.9 8.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MtN3_slv 1/1 28 47 .. 1 20 [. 6.6 2.2
NiFeSe_Hases 1/1 46 51 .. 541 546 .] 0.9 8.7
Lipase3_N 1/1 61 197 .. 1 148 [] 177.4 2.3e-49
OadB_MmdB 1/1 213 223 .. 406 416 .] 1.8 6.3
DC1 1/1 248 258 .. 34 44 .] 4.8 4.4
Lipase_3 1/1 342 494 .. 1 175 [] 127.1 3.4e-37
Alignments of top-scoring domains:
MtN3_slv: domain 1 of 1, from 28 to 47: score 6.6, E = 2.2
*->fvLGlvcvifsvavFlsPLs<-*
+ L++v++++sv+vF PL+
F42G9.6a 28 VRLSWVAFGVSVFVFHFPLA 47
NiFeSe_Hases: domain 1 of 1, from 46 to 51: score 0.9, E = 8.7
*->LACavH<-*
LAC++H
F42G9.6a 46 LACSTH 51
Lipase3_N: domain 1 of 1, from 61 to 197: score 177.4, E = 2.3e-49
*->lleavvtlalarwaaviStqgKVEKELEEQElevlrksavtsrrcsl
l+++v+t++la+ +aviS++g ++++++++++++++l
F42G9.6a 61 LVINVITILLAILTAVISARG-----------TIMNSQPRKLIPRLL 96
tiseqfefwvqaatasyTIeitfepvgrgaraikavycskrilEWFliFi
+i+ +++++++a t+++TI+++++++g++++++++++++++ilEWFliF+
F42G9.6a 97 YIRLPIFIAEIALTILATIHAFKSTNGGEGCDFATIARVTIILEWFLIFT 146
akslncpeveptgetlersfsicwvisskrfrlFlegqGhserndltitd
a++++++++++t+++le+s+si+++++s+r+r+F++gq+hs+r++l++ +
F42G9.6a 147 AFAGLVIVFHLTENELEDSASIAQKSWSRRMRIFKIGQDHSMRVALDDLA 196
t<-*
+
F42G9.6a 197 I 197
OadB_MmdB: domain 1 of 1, from 213 to 223: score 1.8, E = 6.3
*->iAAGVlLaylg<-*
++AG+lLay +
F42G9.6a 213 VVAGLLLAYHS 223
DC1: domain 1 of 1, from 248 to 258: score 4.8, E = 4.4
*->sdyfvhdvrCa<-*
++yf+h++ C+
F42G9.6a 248 AEYFLHHATCV 258
Lipase_3: domain 1 of 1, from 342 to 494: score 127.1, E = 3.4e-37
*->rrdIvvafRGTltllellddlliflt..t.dvtpfefdgninveddq
+++Iv+++RG+++l++l++dl + ++ t dv+++ + +
F42G9.6a 342 KKSIVITIRGSCSLIDLVTDLSLEDElmTvDVDQDATLR-------- 380
ddpvvkvhggfvdlyfhrgflslrdqvleevlrllekykked.ypdykiv
++ ++++d +hrg+l+ + +v++ + ++ +++ +++++p+y++v
F42G9.6a 381 ---EDEEIDKRGDVRVHRGMLRSARYVFDTLNKNKILNDLFIsNPSYQLV 427
vTGHSLGGAlAsLaAadlvanglnngplqrdssrvtvvtfGsPRvGnkkg
v+GHSLG+++ sL++++l+++++ +v +++f++P +
F42G9.6a 428 VCGHSLGAGVGSLLTMLLKQEYP----------SVICYAFAPPGCVIS-- 465
eFakavdelvpvksyRvvnrrDiVPrlPpalf<-*
eF + de+ + ++++vv ++DiV r++++++
F42G9.6a 466 EFGQ--DEMEK-YVMSVVSGDDIVSRMSFQSL 494