hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F41E6.9
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Query:  F41E6.9  CE10260    status:Partially_confirmed TR:O16458 protein_id:AAB65951.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
DUF279   SNF7 family                                    261.5    1.2e-74   1
KE2      KE2 family protein                               8.5        0.8   1
DUF232   Putative transcriptional regulator               8.1       0.96   2
HSP70    Hsp70 protein                                    5.1       0.64   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HSP70      1/1      15    50 ..   584   620 .]     5.1     0.64
KE2        1/1      15    53 ..    61    99 ..     8.5      0.8
DUF232     1/2      15    62 ..    90   137 .]    15.0    0.013
DUF232     2/2     126   155 ..   108   137 .]    -1.2  3.1e+02
DUF279     1/1      11   197 ..     1   196 []   261.5  1.2e-74

Alignments of top-scoring domains:
HSP70: domain 1 of 1, from 15 to 50: score 5.1, E = 0.64
                   *->wLkealegeddaekeeikakteeLqkvvqkigekmyq<-*
                      +L +a+ + + +  + i +k+++L++ ++k+  +m +
     F41E6.9    15    DLNNAISNVE-SRSDSIDKKIQKLDQDLMKLRDQMSK    50

KE2: domain 1 of 1, from 15 to 53: score 8.5, E = 0.8
                   *->dkeeardeLeerleqleeeiktLekqeeylekeleelee<-*
                      d+++a +++e r ++++++i +L + +++l+ ++++++e
     F41E6.9    15    DLNNAISNVESRSDSIDKKIQKLDQDLMKLRDQMSKMRE    53

DUF232: domain 1 of 2, from 15 to 62: score 15.0, E = 0.013
                   *->sleeAieflkkkiklLekqieklekeldelkdqittlleelqevqqk
                      +l+ Ai  ++ + ++++k i+kl ++l++l+dq+   +e  +++ +k
     F41E6.9    15    DLNNAISNVESRSDSIDKKIQKLDQDLMKLRDQMSKMREGPSKNLIK 61

                   q<-*
                   q
     F41E6.9    62 Q    62

DUF232: domain 2 of 2, from 126 to 155: score -1.2, E = 3.1e+02
                   *->qieklekeldelkdqittlleelqevqqkq<-*
                      qie l++ +++  d+ ++++e+++  ++
     F41E6.9   126    QIEDLQDQMEDMLDMNNEIQEAMSRQYDTP    155

DUF279: domain 1 of 1, from 11 to 197: score 261.5, E = 1.2e-74
                   *->eairsLrkairkLekrqeslEkkikklelelkklakkgnkmReGPak
                       ++++L+ ai ++e+r++s++kki+kl+++l+kl+ +++kmReGP+k
     F41E6.9    11    VPPPDLNNAISNVESRSDSIDKKIQKLDQDLMKLRDQMSKMREGPSK 57

                   .alKdaAlilLKqkkryEkqldqldgqlanleqvamaienaksnkevlna
                   +++K++Al++LKqk++yE+q+ qld+q++n++q ++ai+++k+n+ +++a
     F41E6.9    58 nLIKQKALRVLKQKRMYENQKGQLDQQAFNMDQSNFAIQGMKDNQVTVAA 107

                   MkggakaMKamnknmdidkiddlMDefedqmekadeisEalsdtlddald
                   Mk+g k+M++++k+m+id+i+dl+D++ed++++ +ei+Ea+s+++d+
     F41E6.9   108 MKDGLKTMQKEYKKMNIDQIEDLQDQMEDMLDMNNEIQEAMSRQYDT--- 154

                   deeDEdEldaELdaLldEigieellsal.pelsaepyllsveLPsvPsee
                   +++DE++l+aEL +L+dE++i+e  +++ +e        ++ +P+vPs++
     F41E6.9   155 PDIDEADLEAELAMLGDELDIGESDTNYlDE--------ALAAPTVPSDK 196

                   l<-*
                   +
     F41E6.9   197 P    197

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