Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F41B5.4
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F41B5.4 CE10222 cytochrome P450 status:Partially_confirmed TR:O16670 protein_id:AAG24106.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
p450 Cytochrome P450 316.1 2.7e-98 1
Bindin Bindin 3.2 5.7 1
NAD_synthase NAD synthase 2.9 5.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
NAD_synthase 1/1 21 30 .. 251 260 .] 2.9 5.3
Bindin 1/1 88 109 .. 1 28 [. 3.2 5.7
p450 1/1 26 489 .. 1 494 [] 316.1 2.7e-98
Alignments of top-scoring domains:
NAD_synthase: domain 1 of 1, from 21 to 30: score 2.9, E = 5.3
*->KRsqlPpgpk<-*
KR++lPpgp+
F41B5.4 21 KRRNLPPGPI 30
Bindin: domain 1 of 1, from 88 to 109: score 3.2, E = 5.7
*->yGnmqGGygYPQAmnpqmgGvPvqnYmg<-*
G + YPQ+ n+ +G+ nY g
F41B5.4 88 -GDTY-KDKYPQPFNQKIRGG---NY-G 109
p450: domain 1 of 1, from 26 to 489: score 316.1, E = 2.7e-98
*->PpgP.plPlfGnllqlgrgkdilhsvltklrkkYGpifrlylGsrpv
PpgP plP +Gn+l + +++ ++ ++ + kkYG+++++++G +p
F41B5.4 26 PPGPiPLPYMGNILTMLM-NKPGYECFRNWTKKYGDVYTFWMGKTPY 71
vvlsgpelvkevLikkgeefsgrpdeawfatlsvpfrgkgilfsdgGprW
v++s+++l k ++++g ++ + + f + + + ++gi+ s+g + W
F41B5.4 72 VMISSYDLLKDTFVRDG-DTYKDKYPQPFNQKI-RGGNYGIVESNG-HLW 118
kalRrlltptfrsfgmgklkslepriqeeaddlverlrktagepgsgrvi
+Rr+ ++t+r+fg gk + + i e ++ +++ + g
F41B5.4 119 NTHRRFALTTLRDFGLGKD-LMHEKILIEVENIFKKFDAQLGLE-----Q 162
ditellsravlnvIcsilFgvrfdsledee....alplvklvqellllvs
d++ ++ a nvI+ +Fg rf+ + ee+ +++ +l+++ + + ++
F41B5.4 163 DVSVVMNNAIANVINQNIFGYRFE-GDKEEdfkkLRELMEYQETAFATFK 211
spdhqlldlfp.lllylpgphlrkfkearkelkdyldklieerretlddd
+ +++ ++ + ll+ + ++ +++e r+ ++ ++d ie +r+++d d
F41B5.4 212 VYV-EAFIPKVgALLPGR-SLDVLLEEWRDNFYSFFDTQIENHRKKIDFD 259
geeeekkksprdfldalllaknaemeeekdge.reselsdeelaatvldl
+d++ a l + +++e ge + +s+++l t+ldl
F41B5.4 260 ------SQESLDYAEAYLKEQ---RKQEALGEfE--LFSNKQLSNTCLDL 298
lfAGteTTsstlswaLylLakhPevqaklreEidevigdhrkeisptydD
AG TT +t +waL++ + Pev++k+r E+dev+g +r +t +D
F41B5.4 299 WSAGLSTTYTTVTWALAYVLNSPEVLEKMRSELDEVVGKDR---FVTTAD 345
lqnmPyldavIkEtLRlypvvpnlllpRvatkDteigGylIPKGtlVivn
+++Py++a+I+E++R ++p ++ +++t+Dt+i+Gy I+KGt Vi
F41B5.4 346 KNDLPYMNAAINEVQRCANLLP-VNVAHATTRDTVINGYAIKKGTGVIAQ 394
lyslhrDpkvfpnPeeFdPeRFldengtaivnfkrksfaflPFGaGpRnC
++ +++D+kvfp+P +F+P+RF de g + +k + +PF+ G+R+C
F41B5.4 395 ISTVMLDEKVFPDPYKFNPDRFIDEHG-----KLIKVEQLIPFSIGRRQC 439
lGerlArmElflfLatlLqrFeleplpgvdpppidetpiisglvlppkpy
+Ge+lArmE+flf+a + ++ +p + + p id+ + ++ pk++
F41B5.4 440 PGEGLARMEIFLFVANFFNHYQISP-SSEGFPSIDKSDR---VGVFPKKF 485
klkf<-*
k ++
F41B5.4 486 KAIL 489