hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F40G9.2
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Query:  F40G9.2  CE19849    status:Confirmed TR:Q9TZ68 protein_id:AAC68797.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
COX17    Cytochrome C oxidase copper chaperone (COX17   152.4    1.2e-50   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
COX17      1/1       2    63 .]     1    69 []   152.4  1.2e-50

Alignments of top-scoring domains:
COX17: domain 1 of 1, from 2 to 63: score 152.4, E = 1.2e-50
                   *->PatatpskapaaasiapkpKlkKpCCACPETKkaRDaCIiEksnGEe
                      Pa+++  k+++a+s+ap++Kl K+CCACPETK++RDaCIiE+  GEe
     F40G9.2     2    PAEPQ--KSTEAGSVAPEKKL-KACCACPETKRVRDACIIEN--GEE 43

                   naYCgkLIEAHKkCMRaeGFnv<-*
                   +  CgkLIEAHK+CMRa+GFn+
     F40G9.2    44 K--CGKLIEAHKACMRAAGFNI    63

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