Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F40A3.5
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Query: F40A3.5 CE30783 protein kinase status:Partially_confirmed TR:O16262 protein_id:AAB65324.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 51.1 4.6e-13 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pkinase 1/1 150 354 .. 52 272 .. 51.1 4.6e-13
Alignments of top-scoring domains:
pkinase: domain 1 of 1, from 150 to 354: score 51.1, E = 4.6e-13
*->lkrLsHpNIvrligvfed..tddhlylvmEymegGdLfdylrrng..
l +L+HpN++rl+ v + + t ++++ +E+++gG L+dy++ + ++
F40A3.5 150 LSKLDHPNLIRLLAVSQLsfTVFRPMIALEWLPGGTLADYFQFKVre 196
......gplsekeakkialQilrGleYLHsng......ivHRDLKpeNIL
++++++ p+ k+ ++i +Q+ ++l+Y+Hs+ ++ +++ H + ++N+L
F40A3.5 197 kddserSPIQLKDMLSILYQVSQALKYIHSQLdefgqeLTHGRIFTRNVL 246
lden...dgtvKiaDFGLArllesssklttfvGTpwYmmAPEvileg...
++e++ + vK++DFG A ++ t + + Ym +PE+ l + ++
F40A3.5 247 VTEPdlrKCEVKLGDFGDAPMG--LEYSTPI---IAYM-PPEI-LCCaer 289
.rgysskvDvWSlGviLyElltggplfpgadlpaftggdevdqliifvlk
+++ ++ DvW +Gv ++E lt g
F40A3.5 290 iPPHRPENDVWMFGVFIWECLTLG-------------------------A 314
lPfsdelpktridpleelfriikrpglrlplpsncSeelkdLlkkcL<-*
+P + + ee+ + + p++ l +p++c+ ++ L+++cL
F40A3.5 315 QPHFR-------KSVEEIKKSFRLPDRGLSCPPTCPLDVWTLVSDCL 354