hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F39H2.2
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Query:  F39H2.2  CE16017  locus:cyp-14 peptidylprolyl isomerase status:Partially_confirmed TR:O18161 protein_id:CAB10726.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
pro_isomerase Cyclophilin type peptidyl-prolyl cis-tr    78.1    1.2e-21   1
rrm           RNA recognition motif. (a.k.a. RRM, RBD    60.1    3.1e-16   1
Utp21         Utp21 specific WD40 associated putative     2.3        9.3   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Utp21           1/1      89    99 ..   266   278 .]     2.3      9.3
pro_isomerase   1/1       1   163 [.     1   180 []    78.1  1.2e-21
rrm             1/1     241   312 ..     1    77 []    60.1  3.1e-16

Alignments of top-scoring domains:
Utp21: domain 1 of 1, from 89 to 99: score 2.3, E = 9.3
                   *->vgyCsGVvaflrn<-*
                      ++  +G+v+f+ n
     F39H2.2    89    TR--MGIVSFVNN    99

pro_isomerase: domain 1 of 1, from 1 to 163: score 78.1, E = 1.2e-21
                   *->kvyFDitiggkplGrIvfeLfgdvvPkTaeNFraLctgekgfgkklf
                         ++i++    lG+  + Lf +  P    NF++Lc   k++
     F39H2.2     1    -MAVLIETT---LGDLIIDLFVKERPRCSLNFLKLC---KKKY---- 36

                   YkGstFHRVIpnFMiQGGDftagnqGtGGkSIYG.......ekFkDEnf.
                   Y+ + FH +  n + Q GD ++g+ G+GG+S+Y +  ++++ +F+ E  +
     F39H2.2    37 YNLNQFHSIERNYVAQTGD-PTGT-GKGGESVYSdmygeqgRYFEREDLp 84

                   nlkHdrhepGtLSMANaGdpnTNGSQFFItTvk.tpwLDGKHVvdfGYAV
                   +  H+r   G++S  N G  n  GSQFFIt  ++ ++LD  H+      +
     F39H2.2    85 KMRHTR--MGIVSFVNNG-DNMLGSQFFITLGEnLDYLDDQHT------I 125

                   FGkVveGmdVVkkIenvgtdeyGksgdkpskeVkIadcgqle<-*
                   FG+V+eG++  +k+  +  d    ++++p k+++I+   +l+
     F39H2.2   126 FGQVTEGLETLEKLNEQLAD----TNNRPFKDIRISHTIVLD    163

rrm: domain 1 of 1, from 241 to 312: score 60.1, E = 3.1e-16
                   *->lfVgNLppdvteedLkdlFskfGpivsikivkDhiekpketgkskGf
                      lfV  L+p +t+edL+ +Fs fG+i++++iv+D     +  g s  +
     F39H2.2   241    LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRD-----RRSGDSLQY 282

                   aFVeFeseedAekAlealnGkelggrklrv<-*
                   aF+eF++  + e A  ++++  +++r+++v
     F39H2.2   283 AFIEFDNAKSCEQAFFKMDNVLIDDRRIHV    312

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