hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F38C2.5
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Query:  F38C2.5  CE16004   Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains) status:Confirmed TR:O45491 protein_id:CAB05191.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and simil    86.7    1.6e-24   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-CCCH    1/2      73    99 ..     1    27 []    46.3  2.9e-12
zf-CCCH    2/2     116   142 ..     1    27 []    46.8  1.9e-12

Alignments of top-scoring domains:
zf-CCCH: domain 1 of 2, from 73 to 99: score 46.3, E = 2.9e-12
                   *->yktelCrffsrtGtCkyGdrCkFaHge<-*
                      +kt+lC++f+ t +C+yG++CkFaH++
     F38C2.5    73    FKTALCKTFQLTRACSYGEQCKFAHSV    99

zf-CCCH: domain 2 of 2, from 116 to 142: score 46.8, E = 1.9e-12
                   *->yktelCrffsrtGtCkyGdrCkFaHge<-*
                      ykt+lC++fsrtG+CkyG +C+F+H
     F38C2.5   116    YKTVLCDNFSRTGHCKYGTKCQFIHRA    142

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