Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F36H5.1
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Query:  F36H5.1  CE27156    status:Partially_confirmed TR:P91300 protein_id:AAK31520.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
MATH          MATH domain                               543.3   1.6e-159   6
hexapep       Bacterial transferase hexapeptide (thre     8.1        3.2   1
YceI          YceI like family                            6.4        1.1   1
Peptidase_S35 36KDa capillovirus serine protease (S35     2.0        8.1   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
MATH            1/6      13   132 ..     1   159 []    31.7  1.9e-07
MATH            2/6     150   262 ..     1   159 []    62.0  8.5e-16
YceI            1/1     239   265 ..   151   179 .]     6.4      1.1
MATH            3/6     282   399 ..     1   159 []   139.7  5.3e-38
MATH            4/6     430   544 ..     1   159 []    85.3  3.2e-22
MATH            5/6     566   679 ..     1   159 []   134.2  2.3e-36
Peptidase_S35   1/1     701   732 ..   342   374 .]     2.0      8.1
MATH            6/6     696   809 ..     1   159 []   124.2  2.4e-33
hexapep         1/1     800   817 ..     1    18 []     8.1      3.2

Alignments of top-scoring domains:
MATH: domain 1 of 6, from 13 to 132: score 31.7, E = 1.9e-07
                   *->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
                      tikn+Sk+         ge+ ++ + +++ n+ W+   l+i + ++
     F36H5.1    13    TIKNVSKFS-------AGEIQFS-DETIWRNLIWK---LKISKLDD- 47

                   egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
                         flg+ ++C + ++        +  i    + k+vsdnG
     F36H5.1    48 ------FLGVSVYCSQTSNTW----IKDCQIVGILECKIVSDNGE----- 82

                   ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
                        +  +      +  +  p  ++ +   f +F++Wd++++++   l
     F36H5.1    83 ----THEGIR-----LLNMKPPRKIEGPMIDFREFLKWDEMKKNF---LT 120

                   dDsiiiEaeVkI<-*
                    Ds+ i + V+
     F36H5.1   121 ADSVKIVVIVNN    132

MATH: domain 2 of 6, from 150 to 262: score 62.0, E = 8.5e-16
                   *->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
                      t+k+  +++       e+e  ++ ++ e+ +  Wr   ++++++ g
     F36H5.1   150    TFKHLARFE-------ENETQFS-DSKEWAGTSWR---ICVKKEEG- 184

                   egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
                         +lg yL+C+ + + s         + + ++l++ s  +
     F36H5.1   185 ------YLGCYLQCESNPNTS------LICVSAICELRIKSKENYE---- 218

                   ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
                       +   +         F +pt  g++k     +++W+dL ++y   lv
     F36H5.1   219 ----IFDLDV------LEFSRPTMLGNSK-----LMKWEDLISNY---LV 250

                   dDsiiiEaeVkI<-*
                    Ds++iEa  +
     F36H5.1   251 SDSVTIEADLEA    262

YceI: domain 1 of 1, from 239 to 265: score 6.4, E = 1.1
                   *->lkwnqsleaggpmvgdeVkveidleavkq<-*
                      +kw   ++++  +v+d+V++e+dlea+
     F36H5.1   239    MKWE--DLISNYLVSDSVTIEADLEAYNE    265

MATH: domain 3 of 6, from 282 to 399: score 139.7, E = 5.3e-38
                   *->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
                       + ++S+i+       ege++++   e+rfnipWr   + ++r  g
     F36H5.1   282    QFYDVSRIE-------EGESRFS-AFEKRFNIPWR---IELKRVSG- 316

                   egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
                         fl+++LhC  +  ++    +l   iet++++ lvs nGk
     F36H5.1   317 ------FLEIHLHCGEN--AT----FLYHQIETDCWFNLVSTNGKH---- 350

                   ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
                       l+++++       vF++  + ++ k+  kk i+Wdd+++dy   ++
     F36H5.1   351 ----LMRQMS------AVFCRDVDMESLKKSLKKVIRWDDMMTDY---VI 387

                   dDsiiiEaeVkI<-*
                   +Ds+iiEa+++I
     F36H5.1   388 NDSFIIEAHIEI    399

MATH: domain 4 of 6, from 430 to 544: score 85.3, E = 3.2e-22
                   *->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
                      ++ n+S+++       ++e     ++e r+ ipWr   ++ +r  +
     F36H5.1   430    KVNNVSRFL-------DDEKQWG-NTELRYEIPWR---IQAKRTYD- 464

                   egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
                         fl+ yL C+ e    +  + l+  i te t  lvs nG+
     F36H5.1   465 ------FLEMYLFCDGE----G--NGLDQLIKTEVTCNLVSTNGNN---- 498

                   ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
                       + ++ k       +Fekp g g +k     Fi+W+d+ + +   l+
     F36H5.1   499 ----FRRTSK------LCFEKPGGQGIIK-----FIKWNDMIESF---LN 530

                   ..dDsiiiEaeVkI<-*
                   + +Ds+i+Ea+VkI
     F36H5.1   531 plEDSLIVEAHVKI    544

MATH: domain 5 of 6, from 566 to 679: score 134.2, E = 2.3e-36
                   *->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
                      t++++S+ +       eg   ++  +ee++++ W+   ++++  +g
     F36H5.1   566    TVRDVSSAE-------EGNVVFS-ATEEWYDVQWS---ISMKYING- 600

                   egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
                         f++l L C+k  ++        Wsiet f+l lv +nGk+
     F36H5.1   601 ------FVELLLSCDKDLNAH-----EAWSIETNFQLILVGANGKR---- 635

                   ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
                       lt   +      h+Fekp+++g +k     +i+W+d++d+y    v
     F36H5.1   636 ----LTDYFE------HTFEKPDSIGDSK-----LIRWEDMLDQY---AV 667

                   dDsiiiEaeVkI<-*
                   +Ds+++Ea+V+
     F36H5.1   668 EDSLTVEARVNF    679

Peptidase_S35: domain 1 of 1, from 701 to 732: score 2.0, E = 8.1
                   *->SelseG.sslsnaelrrfkkaPWredkgkeDgSe<-*
                      S+  eG++  s  e++    aPWr  ++ke  +
     F36H5.1   701    SNVREGeFHFSKTETH--CDAPWRISLKKEEACI    732

MATH: domain 6 of 6, from 696 to 809: score 124.2, E = 2.4e-33
                   *->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
                      t+k+ S+++       ege +++ ++e++ + pWr   ++++++
     F36H5.1   696    TVKKLSNVR-------EGEFHFS-KTETHCDAPWR---ISLKKEEA- 730

                   egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
                          + +yLhC+k+  +s   +  +Wsi++e +l l s  G+
     F36H5.1   731 ------CILIYLHCDKL--LS---NDENWSIQVEVQLVLGSETGRT---- 765

                   ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
                       lt k++      h+F++p+g+ w+k      + W+dLe+d+   +v
     F36H5.1   766 ----LTDKVT------HIFNEPEGIHWTK-----DLTWEDLERDF---MV 797

                   dDsiiiEaeVkI<-*
                   dDs+ iEa+VkI
     F36H5.1   798 DDSVKIEARVKI    809

hexapep: domain 1 of 1, from 800 to 817: score 8.1, E = 3.2
                   *->gviIGdnvvIgpgvvIgd<-*
                       v+I+++v+I   v+I +
     F36H5.1   800    SVKIEARVKIVKPVEIDN    817



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