Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F36H12.10
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Query: F36H12.10 CE09981 status:Partially_confirmed TR:Q9TZQ1 protein_id:AAC26934.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Y_phosphatase Protein-tyrosine phosphatase 306.5 3.2e-88 1
DSPc Dual specificity phosphatase, catalytic 8.8 0.34 1
MH2 MH2 domain 4.4 3.3 1
DUF612 Protein of unknown function, DUF612 3.9 0.69 1
Lipoprotein_5 Transferrin binding protein-like solute 1.1 9.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MH2 1/1 5 32 .. 135 163 .. 4.4 3.3
Lipoprotein_5 1/1 22 39 .. 770 788 .] 1.1 9.2
DUF612 1/1 47 71 .. 493 517 .] 3.9 0.69
DSPc 1/1 290 316 .. 99 125 .. 8.8 0.34
Y_phosphatase 1/1 131 363 .. 1 274 [] 306.5 3.2e-88
Alignments of top-scoring domains:
MH2: domain 1 of 1, from 5 to 32: score 4.4, E = 3.3
*->frkfyqllrqaansgfeAtaaQAAAvaGk<-*
++ + q+l+++++s+ e+ +aQA Av Gk
F36H12.10 5 NNNCGQMLSDSSESS-EPPRAQAGAVFGK 32
Lipoprotein_5: domain 1 of 1, from 22 to 39: score 1.1, E = 9.2
*->saasagVVFGAKKrQqevk<-*
++a ag+VFG+K ++ ++
F36H12.10 22 PRAQAGAVFGKK-DKGKKA 39
DUF612: domain 1 of 1, from 47 to 71: score 3.9, E = 0.69
*->aaenkKKnKKdKkKkesEkaveEsv<-*
a+e+ K+ KK+KkK + E a +++
F36H12.10 47 ATEGSKRVKKEKKKDDGEAAKGDPT 71
DSPc: domain 1 of 1, from 290 to 316: score 8.8, E = 0.34
*->IdkarqkggkVLVHCqAGiSRSAtlii<-*
+++ r + ++ VHC AGi R++t+++
F36H12.10 290 LSAIRGSKVPIVVHCSAGIGRTGTIVA 316
Y_phosphatase: domain 1 of 1, from 131 to 363: score 306.5, E = 3.2e-88
*->NkeKNRykdilpyDhtRVkLk..egsDYINAnyidgpqsrtlvvykk
KNRy+d+++ D + VkL ++ +++YI+Any+ +p
F36H12.10 131 AITKNRYQDVPCQDLSAVKLDqpSPCNYIHANYVGCP-------MIP 170
pkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtklvEkgreeeKtCaqY
+k++I++QgPl+ Ti++FW+Mv+++kv+ IVML+k vE+g+ K CaqY
F36H12.10 171 EKRFICAQGPLDQTIDEFWWMVIQNKVEQIVMLCKTVEMGK--LK-CAQY 217
WPeeggeeggsltyG.ditVtlvseekk..ddddytvRtleltn.gdesk
WP + g++lt +++ V++vs k + d+++ ++ l+lt++g
F36H12.10 218 WPA---AQGEKLTLKsGCVVENVSGSKPmeRDPEIQITMLNLTYsG---- 260
neakqeklkgetrtVthyhytgWPDhgvPesgpkslldflrkvrksqsqe
g+t +V+h+++t+WPD+gvP+ + l++l +r s+
F36H12.10 261 ---------GQTMSVRHLQWTEWPDRGVPPCK-LTSLELLSAIRGSKV-- 298
nesgeaspdsgprSsctgPivVHCSAGiGRTGtfiaidillqqleaegvv
PivVHCSAGiGRTGt++ai+++l+++ +++ +
F36H12.10 299 ------------------PIVVHCSAGIGRTGTIVAIEYILEKIAENKPC 330
idifdivkelRsqRpgmVQteeQYiFiydaile<-*
+ ++++vk lR+qR++++Q++ QY+Fi++++l+
F36H12.10 331 PPMPELVKALRDQRAFSIQNDVQYLFIHRVMLN 363