Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F35C5.5b
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Query: F35C5.5b CE15946 Lectin C-type domain short and long forms, von Willebrand factor type A domain status:Partially_confirmed TR:O45440 p
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
vwa von Willebrand factor type A domain 112.4 2.3e-34 1
CMAS Cyclopropane-fatty-acyl-phospholipid synthas 6.5 0.73 1
14-3-3 14-3-3 protein 3.2 4.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
14-3-3 1/1 174 215 .. 1 42 [. 3.2 4.5
vwa 1/1 35 222 .. 1 189 [] 112.4 2.3e-34
CMAS 1/1 353 371 .. 156 174 .] 6.5 0.73
Alignments of top-scoring domains:
14-3-3: domain 1 of 1, from 174 to 215: score 3.2, E = 4.5
*->reelvylakLaeqaEryeemveamkkvaelgeeLsvEeRnLl<-*
+++ v +a +a eem++ + ++a+ g + ++E+ nL+
F35C5.5b 174 KASGVSIATVAFDQTGDEEMIKLIGEIATPGFNFTNEDENLV 215
vwa: domain 1 of 1, from 35 to 222: score 112.4, E = 2.3e-34
*->DivFllDgSgSigeenrFekvkdfvkklveknld......igpdgtr
D+v ++D S +++e+ + +v ++++++ + ++ +++ i++++tr
F35C5.5b 35 DVVVVVDNSAPMTQEG-LTEVAAQIVTVFG-AGTrigtnyIDKRTTR 79
vglvqyssdvrtefsLndytskddllaai...lknlrylgGgTnNtgkAL
vglv+y+++++++++Ln+++s ddl + + + l n + + + ++k++
F35C5.5b 80 VGLVTYNTEATIQADLNRFQSPDDLFSTVfqiLPNDLSTSEDVF-LAKGI 128
kyalenlfsstMlkngraagsRpenapkvlillTDGksndgpdve.aaaa
+a ++l + r+++ R+ n+++++i++ ++++g+++++++a+
F35C5.5b 129 GAAEQLLAAG------RKNNTRK-NYKQMVIVYASAYNDEGEEDPrPIAE 171
lrrk...giivfavGvdadeeeLr.iasepeseghvfyvedfddlwlqlk
+ ++++ i+++a+ + dee ++ i e++++ f+++++d+++ +
F35C5.5b 172 RLKAsgvSIATVAFDQTGDEEMIKlIG---EIATPGFNFTNEDENLVK-- 216
dlqeal<-*
++q a+
F35C5.5b 217 EIQTAM 222
CMAS: domain 1 of 1, from 353 to 371: score 6.5, E = 0.73
*->CakaFRkGyidvhQftltK<-*
+++aFR+G+ +v+Q t +
F35C5.5b 353 SSSAFRVGWQNVNQYTVSE 371