hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F35C5.9
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Query:  F35C5.9  CE15950   Lectin C-type domain short and long forms, von Willebrand factor type A domain status:Partially_confirmed TR:O45445 p

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N
--------  -----------                                   -----    ------- ---
vwa       von Willebrand factor type A domain            90.6    1.7e-27   1
CAT_RBD   CAT RNA binding domain                          5.8        3.7   1
MucB_RseB MucB/RseB family                                2.6        5.8   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
MucB_RseB   1/1      22    40 ..     1    24 [.     2.6      5.8
CAT_RBD     1/1      56    70 ..    48    62 .]     5.8      3.7
vwa         1/1      56   236 ..     1   189 []    90.6  1.7e-27

Alignments of top-scoring domains:
MucB_RseB: domain 1 of 1, from 22 to 40: score 2.6, E = 5.8
                   *->MkklqlslslLllvSLlasptasA<-*
                      M ++   l+l+ll +L+asp  +A
     F35C5.9    22    MHQI---LTLFLL-ALAASPS-QA    40

CAT_RBD: domain 1 of 1, from 56 to 70: score 5.8, E = 3.7
                   *->EKiFiLknedeqerF<-*
                      +++F+++n+++++++
     F35C5.9    56    DIVFVVDNSKNMNLY    70

vwa: domain 1 of 1, from 56 to 236: score 90.6, E = 1.7e-27
                   *->DivFllDgSgSigeenrFekvkdfvkklveknld......igpdgtr
                      DivF++D S+++   n    v +++++l++  + + +++ ++p++tr
     F35C5.9    56    DIVFVVDNSKNMNLYN----VYNTISNLFN-PFVqigtgyDDPRSTR 97

                   vglvqyssdvrtefsLndytskddllaai...lknlrylgGgTnNtgkAL
                   vg ++y+ ++++++++ + +s++dl++ i+  +    ++ + T+ +  +L
     F35C5.9    98 VGFITYNWNATDVADFYKLQSYSDLSSQIqalSVTPLSRADETY-IDTGL 146

                   kyalenlfsstMlkngraagsRpenapkvlillTDGksndgpdve.aaaa
                   ++a+++++ +        +g R  n++kv++l+T  ++++ + +e+
     F35C5.9   147 QAAINMINAT--------GGLRD-NYKKVVVLFTSKYNYYHTYPEdLTDY 187

                   lrrkgiivfavGvdadeeeLr.iasepeseghvfyvedfddlwlqlkdlq
                   l+  g+++++v  + d+ + +++  +  s g +f  +d +       +lq
     F35C5.9   188 LKSTGVTIITVNTGGDSYTTQsLRDKIASKGMAFAMSDGNTTA----ELQ 233

                   eal<-*
                   +a+
     F35C5.9   234 KAV    236

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