Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F34D10.2
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Query: F34D10.2 CE01570 status:Partially_confirmed TR:Q17969 protein_id:CAA85494.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CDC45 CDC45-like protein 1010.6 3.2e-303 1
Utp14 Utp14 protein 4.8 1.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Utp14 1/1 141 200 .. 1 63 [. 4.8 1.1
CDC45 1/1 21 561 .. 1 830 [] 1010.6 3.2e-303
Alignments of top-scoring domains:
Utp14: domain 1 of 1, from 141 to 200: score 4.8, E = 1.1
*->eSdDeedESdseeeEedsdDdaHqklLqaitsldtvkkikeskrskr
+SdDeed s+e+E+ + q+++++ + ++ + +r++r
F34D10.2 141 DSDDEED---SDEDEDQEYISYEQRMEKIRRKAIKREEMQIWERQRR 184
kktesykesefnssrd<-*
+ + y es ss++
F34D10.2 185 TILWRYYESTWFSSPS 200
CDC45: domain 1 of 1, from 21 to 561: score 1010.6, E = 3.2e-303
*->rvvLfVsslDvDALCAtkILqaLlkcDhiqytIVPVsGyseLeraLs
+vvL+Vs+ D+DALC+t+IL++Ll+cD+i+++I++V+G+s++e++
F34D10.2 21 SVVLIVSV-DTDALCTTMILTHLLRCDDIPFSILAVEGWSSVEKI-- 64
tvFAPHDnDNksflesqedvkyvvLiNcGavvDLlttLqiiPpesviDvD
f++sqe++++++LiNcGa+++L t+Lq iPp+s++
F34D10.2 65 ------------FADSQEQKCHYILINCGATRSL-TRLQ-IPPASIA--- 97
EksGEqsFRRtiyViDSHRPwnleNiYedsHAnqqIkllddgeiAtKLCR
+ViDSHRP+++eN+Ye+ +qI+ll+++++
F34D10.2 98 ------------FVIDSHRPFHIENVYEN----GQIHLLANPSE------ 125
qGGERDAFEKLEFDvDsdsEldipaledifydsleddeeseDeEdSGDsS
+sEl+ip+le+++++ +s+DeE Ds
F34D10.2 126 -----------------MSELQIPDLESVIRE------DSDDEE---DS- 148
arredErenDnsGgdEesdqedlsaRsRrrfeeerherRGnssirstdls
dE++dqe++s+++R +e++r++++
F34D10.2 149 --------------DEDEDQEYISYEQR--MEKIRRKAI----------- 171
errrerreweeyRrillfyYeqgeyfGeSsavmlfeLAsmLgrddndmLW
+r+e+++we++Rr++l++Y+++++f+++s+v+l+e+A++++r++++++W
F34D10.2 172 -KREEMQIWERQRRTILWRYYESTWFSSPSCVTLLEMAAEMNRVSAETMW 220
lAIVGLTslliqkkIslevYtqtdvellqdeVsRlnpknednetivgsLD
+++VGL+s++++k+Is+e+Ytq++v++++++V+R++pkn++n
F34D10.2 221 FTAVGLNSAMADKLISIEMYTQICVDRMRPFVHRFMPKNIVN-------- 262
LLtnAnnnAqEqAARsAtAtAtGAARAqnRAvRsvisKNtkspDllDRsr
++k++Dll +
F34D10.2 263 --------------------------------------QGKVDDLL---H 271
ItfesdLrLvLYrHWSLydSmyySaYvsakLklWserGqkrLheLLAkMG
Itf+++L+L+LY+HW+L+++m++S+Y+s+k+k+W+++G++++++LLA++G
F34D10.2 272 ITFGRELPLALYSHWDLFSAMMVSEYFSIKTKNWTQKGDVNIRHLLAQLG 321
lpLvevkQtyeaMdlsLkrnLrsmlerlapkYGlkDiifqtFtrtlGfrg
++L+e+kQ++ea++ +++rnL ++++l+ +++D++f+tF++tlG++g
F34D10.2 322 ITLHETKQKFEALP-TEQRNL--VVDVLE---KEMDSSFATFFGTLGYCG 365
kPlsAsDvVeAvtALLEmgnGiKiEvDtPGmvFAsssttPLGnsFGAnLn
k lsA+Dv++Avt++LEm
F34D10.2 366 K-LSACDVARAVTLRLEM-------------------------------- 382
PAnPnAqtsELFAtKRvWnLGtALtDsitsaldaakinaesndeTeaeeG
+++eT
F34D10.2 383 ----------------------------------------PKSET----- 387
LHvDvsstqPALAAveednflealdslsRsvwvsNFYesydALDdsRsdk
++n++++++s++Rs s++++ R+d+
F34D10.2 388 ----------------IMNRFRSGQSILRS--------SITGE---RQDR 410
ldlLnrgleLAkkLlraivrtvaslLekrlIkslgpFrlcvLqeGpDldl
l+l+n+++++++++l+++++tva+++++++I+++gp++l+++++++D+d+
F34D10.2 411 LNLNNTFTSICQRTLQVSWKTVAAAINQSEIIPNGPYYLFSCSRSIDEDM 460
FshPlaLlrLakwLlrsfvesekerqasknAqRKKqPAAsTlLPLvLAap
++++++L+++a++++r+f++++k+r T++PL++++p
F34D10.2 461 VDSRHFLYNTAGFMIRAFASMKKGR---------------TTKPLIAMFP 495
leaedGtyLvVtGtitPayiatedddsdkGHGKPiLNfFGrAFeqaAemT
l++e++++LvVtG ++P iat+++ds++ K +++GrAFe++++mT
F34D10.2 496 LTGESAGWLVVTG-VMP--IATIYEDSLL---K---TCIGRAFERVKKMT 536
sarllhDhFeaSvIelRtSDlskFLdsLtllll<-*
++++++++F +S+++++Ld++++l++
F34D10.2 537 PPLRIQSYF--------VSSTPNGLDGAQYLAV 561