Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F33H1.2
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Query: F33H1.2 CE01568 locus:gpd-4 glyceraldehyde 3-phosphate dehydrogenase 4 status:Partially_confirmed SW:P17331 protein_id:CAA88697.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
gpdh_C Glyceraldehyde 3-phosphate dehydrogen 411.8 6.3e-120 1
gpdh Glyceraldehyde 3-phosphate dehydrogen 346.8 3.1e-147 1
DapB_N Dihydrodipicolinate reductase, N-term 15.9 0.00056 1
GFO_IDH_MocA Oxidoreductase family, NAD-binding Ro 8.5 0.49 1
Nuc_deoxyrib_tr Nucleoside 2-deoxyribosyltransferase 4.5 4.4 1
2-Hacid_DH_C D-isomer specific 2-hydroxyacid dehyd 1.0 4.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
2-Hacid_DH_C 1/1 6 22 .. 50 67 .. 1.0 4.7
DapB_N 1/1 4 35 .. 1 34 [. 15.9 0.00056
GFO_IDH_MocA 1/1 4 36 .. 1 37 [. 8.5 0.49
gpdh 1/1 3 158 .. 1 180 [] 346.8 3.1e-147
Nuc_deoxyrib_tr 1/1 168 190 .. 164 186 .] 4.5 4.4
gpdh_C 1/1 159 320 .. 1 169 [] 411.8 6.3e-120
Alignments of top-scoring domains:
2-Hacid_DH_C: domain 1 of 1, from 6 to 22: score 1.0, E = 4.7
*->VGivGtGrIGsrvlqrla<-*
VGi G+GrIG r++ r a
F33H1.2 6 VGINGFGRIG-RLVLRAA 22
DapB_N: domain 1 of 1, from 4 to 35: score 15.9, E = 0.00056
*->irvavaGAaGRMGralikavleaGpdleLvaave<-*
+v+++G+ GR+Gr++ +a+ e+ + +++va+ +
F33H1.2 4 ANVGINGF-GRIGRLVLRAAVEK-DTVQVVAVND 35
GFO_IDH_MocA: domain 1 of 1, from 4 to 36: score 8.5, E = 0.49
*->lrvGvvGtGrrlagrrHapallelpdriaelvavadr<-*
+vG+ G+Gr +gr ++a+ e + +++vav d+
F33H1.2 4 ANVGINGFGR--IGRLVLRAAVEKD-T-VQVVAVNDP 36
gpdh: domain 1 of 1, from 3 to 158: score 346.8, E = 3.1e-147
*->mvkVGINGFGRIGRlVlRaalergdlGrsdieVVAINDlfidaeylA
+ +VGINGFGRIGRlVlRaa e++ ++VVA+ND+fi +y++
F33H1.2 3 KANVGINGFGRIGRLVLRAAVEKD-----TVQVVAVNDPFITIDYMV 44
yLlKYDSvHGrfkgevskstVevdddsLvVdGktkgskkIkvfaerdprd
yL+KYDS+HG+fkg tV++d+d+L+V + k+s+kIkvf+ + d
F33H1.2 45 YLFKYDSTHGQFKG-----TVTYDGDFLIVQKDGKSSHKIKVFNSK---D 86
PanlPWgelGvaDiVvESTGvFttkekAsaHlkaGnaGAKKViISAPskd
Pa++ Wg+ + D+VvESTGvFttkekAsaHl++G AKKViISAPs+d
F33H1.2 87 PAAIAWGSVKA-DFVVESTGVFTTKEKASAHLQGG---AKKVIISAPSAD 132
dekekdaptfVmGVNhdkYdpdkehkiiSNASC<-*
ap++V+GVNh+kYd++ ++++iSNASC
F33H1.2 133 ------APMYVVGVNHEKYDAS-NDHVISNASC 158
Nuc_deoxyrib_tr: domain 1 of 1, from 168 to 190: score 4.5, E = 4.4
*->GlrnEdfglplnlMiaglsdnar<-*
+ +n +fg+ ++lM+++++ a+
F33H1.2 168 KVINDNFGIIEGLMTTVHAVTAT 190
gpdh_C: domain 1 of 1, from 159 to 320: score 411.8, E = 6.3e-120
*->TTNCLAPlaKVLndkFGIeeGlMTTVHayTadQktvDgpskkHkDlR
TTNCLAPlaKV+nd+FGI+eGlMTTVHa+Ta+QktvDgps+ k +R
F33H1.2 159 TTNCLAPLAKVINDNFGIIEGLMTTVHAVTATQKTVDGPSG--KLWR 203
rgRaAaiqNIIPtsTGAAKAVglVlPeLkGKLtGmAfRVPTpdVSvvDLt
gR+A+ qNIIP+sTGAAKAVg+V+PeL+GKLtGmAfRVPTpdVSvvDLt
F33H1.2 204 DGRGAG-QNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPDVSVVDLT 252
vrlekpvtyeEInaalkeAaegelkGiLgYtedplVSsDfvgdphdlSSi
vrlekp++ ++I++++k+Aa+g++kGiL+Yted++VS+Dfv+dph SSi
F33H1.2 253 VRLEKPASMDDIKKVVKAAADGPMKGILAYTEDQVVSTDFVSDPH--SSI 300
fDakativlnvgdnfVKvvsWY<-*
fD +a i+ln +nfVK+vsWY
F33H1.2 301 FDTGACISLN--PNFVKLVSWY 320