Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F32H2.4
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Query: F32H2.4 CE28927 WD domain, G-beta repeat (3 domains) status:Partially_confirmed TR:P91867 protein_id:CAB04240.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WD40 WD domain, G-beta repeat 86.2 1e-22 5
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
WD40 1/5 8 31 .. 15 39 .] 6.9 3.6
WD40 2/5 37 76 .. 1 39 [] 31.5 3.7e-07
WD40 3/5 164 204 .. 1 39 [] 29.4 1.4e-06
WD40 4/5 208 242 .. 1 35 [. 24.7 3.2e-05
WD40 5/5 258 275 .. 9 27 .. 3.0 46
Alignments of top-scoring domains:
WD40: domain 1 of 5, from 8 to 31: score 6.9, E = 3.6
*->cvafspdsgpylasgSrDgtiklWd<-*
++af+ d g+ l++g D+++ + +
F32H2.4 8 SIAFNCD-GTKLVCGAFDKKVSVAN 31
WD40: domain 2 of 5, from 37 to 76: score 31.5, E = 3.7e-07
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ + H+s+v+ va+s +++++as+S+D++i++Wd
F32H2.4 37 LRFSWVGsSHSSSVEQVACSEKQPNLFASASADRNICVWD 76
WD40: domain 3 of 5, from 164 to 204: score 29.4, E = 1.4e-06
*->geclatl.gHtspvtcvafspd.sgpylasgSrDgtiklWd<-*
e+++++++H++ v+c+a+s +++g+ la g +D ++ lWd
F32H2.4 164 LEPVTSIqAHSHQVECLAVSISkDGRKLAVGASDASCSLWD 204
WD40: domain 4 of 5, from 208 to 242: score 24.7, E = 3.2e-05
*->geclatl.gHtspvtcvafspdsgpylasgSrDgti<-*
c ++++ H ++++v+fs + g++lasgS+D++i
F32H2.4 208 LICERVIpRHDYGIRAVSFSCN-GQLLASGSEDHSI 242
WD40: domain 5 of 5, from 258 to 275: score 3.0, E = 46
*->Htspvtcvafspdsgpyla<-*
Ht+ ++va++p+ + +la
F32H2.4 258 HTGETYSVAWHPN-SLLLA 275