Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F32B6.8
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Query: F32B6.8 CE09863 Yeast ORF YOR070C protein like status:Partially_confirmed TR:O45434 protein_id:CAB03042.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TBC TBC domain 33.7 7.1e-09 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TBC 1/1 193 418 .. 1 316 [. 33.7 7.1e-09
Alignments of top-scoring domains:
TBC: domain 1 of 1, from 193 to 418: score 33.7, E = 7.1e-09
*->vrqgvpsslRgkVWklllgaqelnnclltdnfkgldlfglvpvllla
g+p lR+++W ll+g+ + n ++ l
F32B6.8 193 ---GIPHKLRPQAWRLLSGYLPTN--------------AERREVTLQ 222
dk.deYeellnknkektvqdqneKssvgirrldyVEAVEKHPLSDDNDKT
+k+deY+ ++++ ++ dq
F32B6.8 223 CKrDEYWHYVEQYFHSRFDDQ----------------------------- 243
KGSLekgsdekalklredldkIekDlsRTfpdeiffqtrlaeqqlkkdqd
+ ++ +I D+ R p +++fq +
F32B6.8 244 --------------NADTFRQINIDIPRMCPLIPLFQQK----------- 268
ldaydkDEfddeddkneppsikqLrrlLvaYswknpqehlgYvQGMnvil
++ r+L+ ++ +p +gYvQG n+++
F32B6.8 269 ------------------MVQEMFERILYIWAIRHPA--SGYVQGINDLV 298
spLLlflkhgvd....................ldeideeqAFwclvkLmd
p+ +++ + +++ + ++ + ++ + ++ e + Fwc ++L+d
F32B6.8 299 TPFFVVF---LSefipqdvevgsfdvsqlpleQCQLIEADSFWCVSSLLD 345
nylpqkyflndlsglnedlrvLdslvkeslPeLyshlkkkenktgsgkKk
+ + ++ + g+++ ++L +l + L +hl+++
F32B6.8 346 SIQDN--YTFAQPGIQRKVLQLRHLMSRVDRPLHKHLESN---------- 383
nllaldltllifafpwfLtlFarelPleivlrIwDilfty<-*
++ l faf+w l re Pl ++r+wD ++++
F32B6.8 384 -----GIEYLQFAFRWMNNLLMREIPLRATIRLWDTYLSE 418