Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F31D5.4
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Query: F31D5.4 CE31799 status:Partially_confirmed TR:Q19930 protein_id:AAM98026.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
GPS Latrophilin/CL-1-like GPS domain 67.6 2.6e-17 1
Glyco_hydro_48 Glycosyl hydrolase family 48 4.8 1.1 1
FixO Cytochrome C oxidase, mono-heme subuni 3.0 6.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Glyco_hydro_48 1/1 45 67 .. 614 636 .] 4.8 1.1
FixO 1/1 430 448 .. 218 236 .] 3.0 6.2
GPS 1/1 625 674 .. 1 54 [] 67.6 2.6e-17
Alignments of top-scoring domains:
Glyco_hydro_48: domain 1 of 1, from 45 to 67: score 4.8, E = 1.1
*->frYHRFWaqsdiAiAngvYaiLF<-*
f YH FWa++d + + + F
F31D5.4 45 FAYHLFWAECDSSLRLSLFNVGF 67
FixO: domain 1 of 1, from 430 to 448: score 3.0, E = 6.2
*->LqvLGTmVDfstynpkanr<-*
L++LGTmVD++ + +
F31D5.4 430 LNSLGTMVDNTVDQRIEYL 448
GPS: domain 1 of 1, from 625 to 674: score 67.6, E = 2.6e-17
*->snpiCvfWdeselslgvWstdrGCelvetskpshttCsCnHLTsFAv
+n+++++Wd ++ + W++dr+Ce+v +s+ ++ +++C+HLT+FA+
F31D5.4 625 GNLKVTWWDIGR---NAWAEDRQCEIVSESD-GILEARCTHLTDFAI 667
Lmdvspn<-*
++d+ n
F31D5.4 668 IVDAALN 674