Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F28C10.3
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Query: F28C10.3 CE07156 protein kinase status:Partially_confirmed TR:Q19858 protein_id:AAB00607.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 180.3 3.1e-50 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pkinase 1/1 29 286 .. 1 294 [] 180.3 3.1e-50
Alignments of top-scoring domains:
pkinase: domain 1 of 1, from 29 to 286: score 180.3, E = 3.1e-50
*->yelleklGeGsfGkVykakhkd..ktgkiVAvKilkkekesikek..
+e+l+++G+G++G+V ++ +++ +t+ i+A+K++ k++++++++
F28C10.3 29 FEILKHIGSGAYGEVAAVRKLNgcDTETIYAMKVME--KRRMSKHkd 73
rflrEiqilkrLsHpNIvrligvfedtddhlylvmEymegGdLfdylrrn
++ E +il +++ p+ ++ ++f+ t++hl +vm++++gGd+++++ ++
F28C10.3 74 MVEHEWKILTTIHNPFFMKMSYSFQ-TKRHLVFVMPFAGGGDMLTMMENE 122
ggplsekeakkialQilrGleYLHsngivHRDLKpeNILldendgtvKia
+ e+ a ++ ++++G+ YLH+++ivHRD+K eN+L+ ++ g++ i+
F28C10.3 123 C-LI-EESAHFYLCELVEGIGYLHEKHIVHRDVKLENLLIGND-GHLMIT 169
DFGLArlle.sssklttfvGTpwYmmAPEvilegrgysskvDvWSlGviL
D GL++ + ++ GT++ m APEv + ++y++ +D+W++G++
F28C10.3 170 DYGLSATGCdAEDAIQGVIGTRHTM-APEV-HLEKKYGTSCDWWAVGITY 217
yElltggplfpgadlpaftggdevdqliifvlklPfsdelpktridplee
+ + k f++ +e
F28C10.3 218 CDMRSD--------------------------KAVFDG-------ADSKE 234
lfriikrpglrlplpsncSeelkdLlkkcLnkDPskRpG..satakeiln
+ + + + r++lp+ +S+ + +++k++ +DP++R+G++ +++
F28C10.3 235 YSDSTAK--KRPRLPKVLSPRERGFVNKLIVRDPTQRLGngPDGTATVKA 282
hpwf<-*
h f
F28C10.3 283 HDMF 286