Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F27C8.5
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Query: F27C8.5 CE28550 BTB (also known as BR-C\/Ttk) domain. status:Partially_confirmed TR:Q19838 protein_id:CAA92463.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
BTB BTB/POZ domain 82.3 3.1e-21 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BTB 1/1 23 130 .. 1 137 [] 82.3 3.1e-21
Alignments of top-scoring domains:
BTB: domain 1 of 1, from 23 to 130: score 82.3, E = 3.1e-21
*->lnelreng..elcDVtlvvgdgegknevtSgkefkAHKavLaAcSpY
l+ r+ g+ + cDV ++ + +H +v +A+S++
F27C8.5 23 LQAKRRAGdfSTCDVKIQLKT----------GFDMVHSVVICAHSDV 59
FkalFtgnfkestteeessviseielddvspedfealLefiYtgelsitq
F + F ++ ++ ++ d++p++++ + +++Y+ge++i+
F27C8.5 60 FSETFDNQ-------RAPYQP--FNMTDFDPDSVRRVFDWMYSGEIDIP- 99
eqksPssckseenveelLelAadklqipslvdaCeefliknl<-*
e +++++L++A ++l++ +l+++ e+ ++++
F27C8.5 100 ----------ETTIADVLAVA-SYLRVTMLQRQIEQKILNHN 130