Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F27C8.5
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Query:  F27C8.5  CE28550   BTB (also known as BR-C\/Ttk) domain. status:Partially_confirmed TR:Q19838 protein_id:CAA92463.2

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
BTB      BTB/POZ domain                                  82.3    3.1e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      23   130 ..     1   137 []    82.3  3.1e-21

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 23 to 130: score 82.3, E = 3.1e-21
                   *->lnelreng..elcDVtlvvgdgegknevtSgkefkAHKavLaAcSpY
                      l+  r+ g+ + cDV ++ +               +H +v +A+S++
     F27C8.5    23    LQAKRRAGdfSTCDVKIQLKT----------GFDMVHSVVICAHSDV 59

                   FkalFtgnfkestteeessviseielddvspedfealLefiYtgelsitq
                   F + F ++           ++   ++ d++p++++ + +++Y+ge++i+
     F27C8.5    60 FSETFDNQ-------RAPYQP--FNMTDFDPDSVRRVFDWMYSGEIDIP- 99

                   eqksPssckseenveelLelAadklqipslvdaCeefliknl<-*
                             e +++++L++A ++l++ +l+++ e+ ++++
     F27C8.5   100 ----------ETTIADVLAVA-SYLRVTMLQRQIEQKILNHN    130



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