Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F26F4.5
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Query: F26F4.5 CE29289 status:Partially_confirmed TR:Q19816 protein_id:AAL02497.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CH Calponin homology (CH) domain 41.2 5.7e-10 1
FF FF domain 6.2 7.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FF 1/1 293 348 .. 1 61 [] 6.2 7.1
CH 1/1 340 462 .. 1 106 [] 41.2 5.7e-10
Alignments of top-scoring domains:
FF: domain 1 of 1, from 293 to 348: score 6.2, E = 7.1
*->kakeaFreLLkehkvityakklliktsnstWseakkklseDpryial
+ +++F+ Lke ++ + + ++++k +++++ +++l
F26F4.5 293 QTRKDFILILKEAVLRKD-------EAERQLETISKSIYDEDDWVNL 332
dses..sereqlFedy<-*
s+++++ r+ + +
F26F4.5 333 TSQHknTLRRNVLLMW 348
CH: domain 1 of 1, from 340 to 462: score 41.2, E = 5.7e-10
*->sqekellrWinsvlagypgkkstlPippvpvtnfftdwlkDGlaLca
+++ ll W++++l+ y ++ ++v+nf++dw D +a+ca
F26F4.5 340 LRRNVLLMWVQEKLELYSDQ--------LTVSNFSSDWT-DCRAFCA 377
Llnklr....................eNlnlaldaaekeG.lgivlvlld
Ll l++++ ++ + ++ ++ ++ + + l++ +e lgi+ + d
F26F4.5 378 LLYDLFpdtmpdvtvspivgdcisrcRRTFQLLEIPFDERaLGISSPTAD 427
.........peDiveaegnpdPDeklvltylwqLirrfq<-*
++ +++++++ ++ + D++ ++ ++ L++r+
F26F4.5 428 sgadedsssACSVI---TGL-TDWRYIMNTVFMLYKRGV 462