hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F26D2.3
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Query:  F26D2.3  CE23683    status:Partially_confirmed TR:Q9U3H9 protein_id:CAB04185.2

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
Branch         Core-2/I-Branching enzyme                298.1    1.9e-90   1
CemA           CemA family                                3.0        6.7   1
Adeno_Penton_B Adenovirus penton base protein             0.4        9.4   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
CemA             1/1      48    56 ..   225   233 .]     3.0      6.7
Branch           1/1     136   340 ..     1   238 []   298.1  1.9e-90
Adeno_Penton_B   1/1     342   354 ..   192   204 ..     0.4      9.4

Alignments of top-scoring domains:
CemA: domain 1 of 1, from 48 to 56: score 3.0, E = 6.7
                   *->VAtYHnMnE<-*
                      V++Y++M+E
     F26D2.3    48    VVVYEKMIE    56

Branch: domain 1 of 1, from 136 to 340: score 298.1, E = 1.9e-90
                   *->iAYlrvVykdyeqrlerlLsasYHPqNqyCfhlDekSpeefkeeLak
                       A++r+V+ dye+ +e++++asYHPqN++Cf++D++S+ ef++
     F26D2.3   136    TAFARIVFADYEF-IEKQVQASYHPQNFFCFAVDANSSAEFQK---- 177

                   dVrvralascfpNVfVlgkeepvtsgGhsilaahlnClkiLlklpsWdWd
                     r++al +c+pNVfVl+  e+++s+Gh+i++ah+nC+k L  ++  +W
     F26D2.3   178 --RMKALERCLPNVFVLPVTESYDSKGHNINLAHYNCMKRLEASR--GWG 223

                   yfinLsahDyPlkTndELvrifksLnganNFIdhtseiGwkeskraKpii
                   y+++L++hD+++k+++EL rif  L gan+ +++++ei+ +++k+ K+++
     F26D2.3   224 YLMLLQNHDVITKSVYELDRIFDLLAGAND-VFMSKEIPGRRNKHSKWDL 272

                   vdpklfkneksdvwkkhyvvdklifwatekrplptslklfkGSawvvLSR
                   +++ lf+ne+ +                     ++ l +++G ++++LSR
     F26D2.3   273 KSLRLFRNESRNS--------------------DYELEISSGFVQASLSR 302

                   afVeymiwgwdnlprtLlqyytntyspdEgyfhTlqcNpdl<-*
                   a Ve+++ ++d ++  L q+ +  y++dE++++T+q N+d+
     F26D2.3   303 AVVEWLVNEVDVSIL-LQQFPE--YGADEQFISTFQSNQDF    340

Adeno_Penton_B: domain 1 of 1, from 342 to 354: score 0.4, E = 9.4
                   *->tPGkYtykaFHPD<-*
                      +PG+ t++ FH D
     F26D2.3   342    MPGHFTNECFHND    354

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