Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F25H8.5a
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Query: F25H8.5a CE20722 locus:dur-1 status:Partially_confirmed TR:Q19790 protein_id:CAA93285.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
LEA Late embryogenesis abundant protein 47.2 1.1e-11 7
RTX RTX N-terminal domain 3.0 1.3 2
HSP70 Hsp70 protein 2.6 3.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
HSP70 1/1 308 333 .. 595 620 .] 2.6 3.4
LEA 1/7 307 387 .. 1 75 [] 13.0 0.041
RTX 1/2 414 450 .. 1 37 [. 3.9 0.61
LEA 2/7 391 460 .. 1 75 [] 49.0 3.6e-12
LEA 3/7 462 497 .. 32 75 .] 4.3 11
RTX 2/2 499 540 .. 1 43 [. 0.5 8.4
LEA 4/7 504 580 .. 1 75 [] 9.0 0.57
LEA 5/7 588 664 .. 1 75 [] 16.7 0.0038
LEA 6/7 665 726 .. 9 75 .] -6.4 1e+04
LEA 7/7 730 798 .] 1 75 [] 7.8 1.2
Alignments of top-scoring domains:
HSP70: domain 1 of 1, from 308 to 333: score 2.6, E = 3.4
*->aekeeikakteeLqkvvqkigekmyq<-*
a ke ++a++++ ++++k+ e + q
F25H8.5a 308 AIKEQFEAAKKKFSEASNKVSETAEQ 333
LEA: domain 1 of 7, from 307 to 387: score 13.0, E = 0.041
*->ekAketadsAkekAseakdaakdKAeeAkdaakeKAeeAkdkakekk
+ ke ++Ak k sea +++ ++Ae+ + +++ A eA+ + + +
F25H8.5a 307 SAIKEQFEAAKKKFSEASNKVSETAEQGAHWTGDRAREAGNTLSNA- 352
ageaKDktg.......nkakekaeeaKdkasdakd<-*
a ++ ++ ++ + ++ e+++e+ ++a +
F25H8.5a 353 AHDGYEQGRdgvadmrERIDEAGHEVAEAAEEGSN 387
RTX: domain 1 of 2, from 414 to 450: score 3.9, E = 0.61
*->tlaniKsqlkqglkstknklksagssaKeaLkkAgss<-*
++++ ++ g+ + ++ +++ag+s+ +aL ++++
F25H8.5a 414 RAEKMYDAAAEGASNMAQSMHEAGKSTGDALSEGAEA 450
LEA: domain 2 of 7, from 391 to 460: score 49.0, E = 3.6e-12
*->ekAketadsAkekAseakdaakdKAeeAkdaakeKAeeAkdkakekk
+k++ + dsA +kA+++++ +k+ Ae ++daa+e A++++++++e+
F25H8.5a 391 QKTGKAIDSAVDKAEDVAEGTKNRAEKMYDAAAEGASNMAQSMHEA- 436
ageaKDktgnkakekaeeaKdkasdakd<-*
++++ D +++e ae+ d+++d +
F25H8.5a 437 GKSTGD----ALSEGAEAGYDAVKDGGR 460
LEA: domain 3 of 7, from 462 to 497: score 4.3, E = 11
*->akeKAeeAkdkakekkageaKDktgnkakekaeeaKdkasdakd<-*
++e+ + k+++ a+++KD +a ae aKd++++a +
F25H8.5a 462 VGENVAHGAGKVADG-AKYVKD----SA---AEGAKDAVHGAHE 497
RTX: domain 2 of 2, from 499 to 540: score 0.5, E = 8.4
*->tlaniKsqlkqglkstknklksagssaKeaLkkAgsslkkaGk<-*
+ ++++ g+ +++++k ag a +++++Ag+++ ++k
F25H8.5a 499 -MRMVGENVAHGAGKVADGAKAAGNYAVDSANTAGEAIVDGAK 540
LEA: domain 4 of 7, from 504 to 580: score 9.0, E = 0.57
*->ekAketadsAkekAseakdaakdKAeeAkdaakeKAeeAkdkakekk
e +++ a+++++ A+ a+++a d A+ A +a + A+ +++a++
F25H8.5a 504 ENVAHGAGKVADGAKAAGNYAVDSANTAGEAIVDGAKTVGQTASDG- 549
ageaKDktg...nkakekaeeaKdkasdakd<-*
+ ++++++ +++ e a++a++ +++ +
F25H8.5a 550 MRMIGENVAhgaGVVVEGAKSAGEQTVEGAK 580
LEA: domain 5 of 7, from 588 to 664: score 16.7, E = 0.0038
*->ekAketadsAkekAseakdaakdKAeeAkdaakeKAeeAkdkakekk
e +++ a+++++ A+ a+++ +d A Akdaa e A A+ k++e
F25H8.5a 588 ENVAHGAGKVADGAKSAGQSIADGAVAAKDAAVEGATTAGNKTVEG- 633
ageaKDktg...nkakekaeeaKdkasdakd<-*
+ + ++++++ +k+++ a++a+d +++
F25H8.5a 634 MRFVGENVAhgaGKVADGAKAAGDTVVEGGK 664
LEA: domain 6 of 7, from 665 to 726: score -6.4, E = 1e+04
*->sAkekAseakdaakdKAeeAkdaakeKAeeAkdkakekkageaKDkt
+A+ek++ + +K +e + a++ A+ A+ ++++ + +a
F25H8.5a 665 AAAEKTESGIAFVGQKIAEGAGAVAGGAKAAGGAVVDG-VAAAGG-- 708
gnkakekaeeaKdkasdakd<-*
++ + a++++ ++d +
F25H8.5a 709 --AVVGGAKAVGSGIADGAK 726
LEA: domain 7 of 7, from 730 to 798: score 7.8, E = 1.2
*->ekAketadsAkekAseakdaakdKAeeAkdaakeKAeeAkdkakekk
e ++ a++++ A+ a++a+ d A+ A a+ + A+ + +++++
F25H8.5a 730 ENVAYGAGAVAGGAKAAGGAVVDGAAAAGGAVVDGAKAVGGFVSDT- 775
ageaKDktgnkakekaeeaKdkasdakd<-*
+a+D ++e+ ++a+ k+ a +
F25H8.5a 776 FSSARD----ETGEALKTAGSKV-KASE 798
[output cut off at A = 10 top alignments]