hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F25H2.5
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Query:  F25H2.5  CE09650   nucleoside diphosphate kinase status:Confirmed TR:Q93576 protein_id:CAB02101.1

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
NDK            Nucleoside diphosphate kinase            347.2   1.7e-100   1
RuBisCO_large  Ribulose bisphosphate carboxylase larg     4.3        3.6   1
Thr_dehydrat_C C-terminal regulatory domain of Threon     4.1        7.1   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Thr_dehydrat_C   1/1      23    48 ..    69    94 .]     4.1      7.1
RuBisCO_large    1/1      74    94 ..     1    23 [.     4.3      3.6
NDK              1/1       5   153 .]     1   148 []   347.2 1.7e-100

Alignments of top-scoring domains:
Thr_dehydrat_C: domain 1 of 1, from 23 to 48: score 4.1, E = 7.1
                   *->efierLnklGydyvdlsdnelakehL<-*
                      ++i+r+++ Gy+ v l   ++ k hL
     F25H2.5    23    KIIARFEERGYKLVALKQMTASKAHL    48

RuBisCO_large: domain 1 of 1, from 74 to 94: score 4.3, E = 3.6
                   *->gIqveRerLdrdvkyGrplLGct<-*
                       ++  ++ Ld  vk Gr +LG+t
     F25H2.5    74    -VAMVWQGLD-VVKQGRSMLGAT    94

NDK: domain 1 of 1, from 5 to 153: score 347.2, E = 1.7e-100
                   *->ERTFImIKPDGVqRgLiGeIIsRFEkKGFkLvGlKllrltkelAekH
                      ERTFI+IKPDGV RgL+G+II+RFE+ G+kLv+lK++ ++k+++e H
     F25H2.5     5    ERTFIAIKPDGVHRGLVGKIIARFEERGYKLVALKQMTASKAHLEVH 51

                   YAehkgKPFFpgLVeFmtSGPVVaMVwEGknVVatgRkLIGaTNPaqaaP
                   Y ++k+KPFFp L+e+m+SGPVVaMVw G++VV++gR ++GaTNP+++aP
     F25H2.5    52 YQDLKDKPFFPSLIEYMSSGPVVAMVWQGLDVVKQGRSMLGATNPLASAP 101

                   GTIRgDFaisvGRNiiHGSDSvESAerEIALWFkeeElvswtsaqan.Wi
                   GTIRgDF+i++GRNi+HGSD+v+SA+rEIA WFk eE+ ++ s+  n+W
     F25H2.5   102 GTIRGDFCIQTGRNICHGSDAVDSANREIAHWFKQEEINDYASPFINsWV 151

                   yE<-*
                   yE
     F25H2.5   152 YE    153

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