Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F25H2.9
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Query: F25H2.9 CE09654 locus:pas-5 proteasome zeta chain status:Confirmed SW:Q95008 protein_id:CAB02097.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
proteasome Proteasome A-type and B-type 157.2 8.2e-44 1
S-AdoMet_syntD2 S-adenosylmethionine synthetase, cent 4.6 3.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
S-AdoMet_syntD2 1/1 153 161 .. 115 123 .] 4.6 3.6
proteasome 1/1 31 219 .. 1 194 [] 157.2 8.2e-44
Alignments of top-scoring domains:
S-AdoMet_syntD2: domain 1 of 1, from 153 to 161: score 4.6, E = 3.6
*->fhInPsGrF<-*
fh+ PsG F
F25H2.9 153 FHLDPSGTF 161
proteasome: domain 1 of 1, from 31 to 219: score 157.2, E = 8.2e-44
*->vngGTTilgirgkdgVViAaDkrvtlGskvlmkgsarKifklyddki
v+ G+T +gi+ + gV++Aa+kr t sk++ ++ ++Ki k+ d +i
F25H2.9 31 VKLGSTSIGIKTSEGVLLAAEKRST--SKLMVNDAIEKISKV-DQHI 74
lcgfAGlaADartLaeyaraelelykltygepgpve...qlvaraadkaq
+++fAGl+AD rtL+e+a+ e++++++ty++++ ve+ +q+va++a +
F25H2.9 75 GVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEdvtQSVANLALQFG 124
vetlkswr.rpygvslleagldekgkpqLysidpsGsvvepkdpatAiGg
+ k +++rp+gv +l+ag+d++g+ L+++dpsG+++ +k a +iG
F25H2.9 125 DDDVKASMsRPFGVAMLFAGVDQEGA-KLFHLDPSGTFIDCK--AKSIG- 170
SGstyAlsalealykkpnlteeeavelakkalkialdrdvysggnievae
++s+ A l ++y lt +e + a +lk++++ +++++ n+ev +
F25H2.9 171 AASDGAEQNLKEQY-HDALTIKEGLKMALAILKQVME-EKLNSANVEVVV 218
i<-*
i
F25H2.9 219 I 219