Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F25C8.1
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Query: F25C8.1 CE18634 ACYL-COENZYME A OXIDASE, PEROXISOMAL (EC 1.3.3.6) (PALMITOYL-COA OXIDASE) (AOX) status:Partially_confirmed TR:Q9XV65
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ACOX Acyl-CoA oxidase 159.8 4.7e-44 1
NtA Agrin NtA domain 7.8 0.68 1
Acyl-CoA_dh Acyl-CoA dehydrogenase, C-terminal domain 6.0 2.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
NtA 1/1 43 59 .. 119 135 .] 7.8 0.68
Acyl-CoA_dh 1/1 305 445 .. 30 162 .] 6.0 2.4
ACOX 1/1 463 597 .. 1 143 [] 159.8 4.7e-44
Alignments of top-scoring domains:
NtA: domain 1 of 1, from 43 to 59: score 7.8, E = 0.68
*->EvEfCvEehrkllaDKP<-*
EvE CvE+h+ l KP
F25C8.1 43 EVEKCVEDHKELQDLKP 59
Acyl-CoA_dh: domain 1 of 1, from 305 to 445: score 6.0, E = 2.4
*->AleeAveYAkeRkqFG......akpIadfQlvqfkLAdmateleaaR
A + A +Y+ R+q+ + ++ ++ +I d+Q q ++ +++ a R
F25C8.1 305 AVTIATRYSTVRRQGEplpgagEVKILDYQTQQYRILPYIAKTIAFR 351
llvyrAAwl..DqGkd...........arleaamAKlfateaAvevadeA
+ ++ ++ kd ++++ + +++ +++ K+ +t ++ ++++
F25C8.1 352 MAGEELQQAflNISKDlrqgnasllpdLHSLSSGLKAVVTFEVQQGIEQC 401
vQihGGyGytkegpnarerdavSypveRlyRDarilrIyEGTsEIqrliI
+ +GG+Gy+ ++ l + +yEG + +++l +
F25C8.1 402 RLACGGHGYSHA-----------SGIPELSAFSCGSCTYEGDNIVLLLQV 440
aRall<-*
a +
F25C8.1 441 ANECE 445
ACOX: domain 1 of 1, from 463 to 597: score 159.8, E = 4.7e-44
*->askaHtrlylvkaFyerinerdaIadePavkpvLqnLanLYalwsle
a+++H+rly+v++F +++ + a++ +++pvL+ L+nLY +
F25C8.1 463 AARWHVRLYIVRNFLQKVCT----APK-DLQPVLRALSNLYIFDLQV 504
ehsGdFLreGylspeqidevtseqllkLcaevRpnAVgLtDaFdlsDffL
+ G F ++Gy++++qid+ + +++ ++ +Rp+AV+++D F++ f+L
F25C8.1 505 SNKGHFMENGYMTSQQIDQLK-MGINESLSTIRPDAVSIVDGFAIHEFEL 553
nSviGryDGdVYenlFeevkqqnPlnntrevkPsYekaLkpmlnra<-*
+Sv+Gr+DG+VY+ lFe+ k ++lnn ev+P++ k+L p + +
F25C8.1 554 KSVLGRRDGNVYPGLFEWTK-HSQLNNK-EVHPAFDKYLTPIMDKI 597