Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F25C8.1
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Query:  F25C8.1  CE18634   ACYL-COENZYME A OXIDASE, PEROXISOMAL (EC 1.3.3.6) (PALMITOYL-COA OXIDASE) (AOX) status:Partially_confirmed TR:Q9XV65

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N
--------    -----------                                 -----    ------- ---
ACOX        Acyl-CoA oxidase                            159.8    4.7e-44   1
NtA         Agrin NtA domain                              7.8       0.68   1
Acyl-CoA_dh Acyl-CoA dehydrogenase, C-terminal domain     6.0        2.4   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
NtA           1/1      43    59 ..   119   135 .]     7.8     0.68
Acyl-CoA_dh   1/1     305   445 ..    30   162 .]     6.0      2.4
ACOX          1/1     463   597 ..     1   143 []   159.8  4.7e-44

Alignments of top-scoring domains:
NtA: domain 1 of 1, from 43 to 59: score 7.8, E = 0.68
                   *->EvEfCvEehrkllaDKP<-*
                      EvE CvE+h+ l   KP
     F25C8.1    43    EVEKCVEDHKELQDLKP    59

Acyl-CoA_dh: domain 1 of 1, from 305 to 445: score 6.0, E = 2.4
                   *->AleeAveYAkeRkqFG......akpIadfQlvqfkLAdmateleaaR
                      A + A +Y+  R+q+ + ++ ++ +I d+Q  q ++    +++ a R
     F25C8.1   305    AVTIATRYSTVRRQGEplpgagEVKILDYQTQQYRILPYIAKTIAFR 351

                   llvyrAAwl..DqGkd...........arleaamAKlfateaAvevadeA
                   +   ++ ++     kd ++++ +  +++  +++  K+ +t   ++ ++++
     F25C8.1   352 MAGEELQQAflNISKDlrqgnasllpdLHSLSSGLKAVVTFEVQQGIEQC 401

                   vQihGGyGytkegpnarerdavSypveRlyRDarilrIyEGTsEIqrliI
                   +  +GG+Gy+              ++  l   +    +yEG + +++l +
     F25C8.1   402 RLACGGHGYSHA-----------SGIPELSAFSCGSCTYEGDNIVLLLQV 440

                   aRall<-*
                   a +
     F25C8.1   441 ANECE    445

ACOX: domain 1 of 1, from 463 to 597: score 159.8, E = 4.7e-44
                   *->askaHtrlylvkaFyerinerdaIadePavkpvLqnLanLYalwsle
                      a+++H+rly+v++F +++ +    a++ +++pvL+ L+nLY   +
     F25C8.1   463    AARWHVRLYIVRNFLQKVCT----APK-DLQPVLRALSNLYIFDLQV 504

                   ehsGdFLreGylspeqidevtseqllkLcaevRpnAVgLtDaFdlsDffL
                    + G F ++Gy++++qid+ +   +++ ++ +Rp+AV+++D F++  f+L
     F25C8.1   505 SNKGHFMENGYMTSQQIDQLK-MGINESLSTIRPDAVSIVDGFAIHEFEL 553

                   nSviGryDGdVYenlFeevkqqnPlnntrevkPsYekaLkpmlnra<-*
                   +Sv+Gr+DG+VY+ lFe+ k  ++lnn  ev+P++ k+L p + +
     F25C8.1   554 KSVLGRRDGNVYPGLFEWTK-HSQLNNK-EVHPAFDKYLTPIMDKI    597



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