Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F22A3.1
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Query: F22A3.1 CE28824 DNA binding protein, ETS domain status:Partially_confirmed TR:Q19695 protein_id:AAA83194.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Ets Ets-domain 149.6 5.1e-41 1
SAM_PNT Sterile alpha motif (SAM)/Pointed domain 119.5 7.6e-34 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SAM_PNT 1/1 155 235 .. 1 90 [] 119.5 7.6e-34
Ets 1/1 374 460 .. 1 89 [] 149.6 5.1e-41
Alignments of top-scoring domains:
SAM_PNT: domain 1 of 1, from 155 to 235: score 119.5, E = 7.6e-34
*->pssfkkeqkrlgipadlRtdPrlWtedhVleWLewavkenkfsLepi
++++++++++lg+p+ d++lW+++h ++W+++++++ f+L+p+
F22A3.1 155 IQDISTTCAKLGLPN----DFYLWSSEHGARWINEMCMQ--FNLQPP 195
dfskFdmsGkeLCslskedFleraPlfvGdiLwehLqiLrkas<-*
++++ ++G +L+ +s++dF++++P ++Gd+L+++Lq +++a+
F22A3.1 196 RNCS--ITGIDLLGMSQKDFEMILP-AGGDTLHAQLQVWKTAF 235
Ets: domain 1 of 1, from 374 to 460: score 149.6, E = 5.1e-41
*->qiqLWQFLleLLtdrqdnsdfIrWtgrdkGeFKlvSKDpeeVARLWG
+++LWQF+ eLL+ ++ +s ++rW++rd+G+FK++ + +AR WG
F22A3.1 374 TVHLWQFIRELLDQPKQYSACVRWVDRDEGTFKIE--SSLLLARYWG 418
erKNNkpnMNYdKLSRALRYYYkknIirKvk.GkRlvYkFvse<-*
+rKN + +MNYdKLSR+LR+YYkk+Ii+K ++ +RlvYkF +
F22A3.1 419 QRKN-RSQMNYDKLSRSLRQYYKKGIIQKPEkKQRLVYKFLPP 460