Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F21F3.1
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Query:  F21F3.1  CE09531    status:Partially_confirmed TR:P91268 protein_id:AAB42278.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
NHL             NHL repeat                              103.0    1.1e-27   4
eRF1_3          eRF1 domain 3                             5.7        4.4   1
Pep_deformylase Polypeptide deformylase                   2.8        8.6   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
NHL               1/4     113   128 ..     1    17 [.     0.4  2.8e+02
eRF1_3            1/1     163   173 ..     1    11 [.     5.7      4.4
NHL               2/4     178   205 ..     1    29 []    39.4  1.9e-09
NHL               3/4     229   257 ..     1    29 []    40.6  8.7e-10
NHL               4/4     279   307 ..     1    29 []    27.7  4.5e-06
Pep_deformylase   1/1     385   403 ..   173   191 .]     2.8      8.6

Alignments of top-scoring domains:
NHL: domain 1 of 4, from 113 to 128: score 0.4, E = 2.8e+02
                   *->lnrPhGvavdpsdGrvy<-*
                        + +G+av+ ++G+++
     F21F3.1   113    IGQVSGLAVN-KNGHIV    128

eRF1_3: domain 1 of 1, from 163 to 173: score 5.7, E = 4.4
                   *->iiqEkklieeF<-*
                      i++Ekk+i+eF
     F21F3.1   163    ISREKKVIDEF    173

NHL: domain 2 of 4, from 178 to 205: score 39.4, E = 1.9e-09
                   *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-*
                      +++PhG+++d ++G+ +V+D+++h+v+++
     F21F3.1   178    FYMPHGLTID-NNGDYWVTDVGSHQVHKI    205

NHL: domain 3 of 4, from 229 to 257: score 40.6, E = 8.7e-10
                   *->lnrPhGvavdpsdGrvyVaD.senhrvqvf<-*
                      ++ P++vav  ++G+++VaD+++n+r+ +f
     F21F3.1   229    FCKPTDVAVA-KNGHIFVADgYCNSRILKF    257

NHL: domain 4 of 4, from 279 to 307: score 27.7, E = 4.5e-06
                   *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-*
                      +  Ph++ + ++ + v+VaD+en rvq+f
     F21F3.1   279    FVVPHSLSLIEDMNIVCVADRENQRVQCF    307

Pep_deformylase: domain 1 of 1, from 385 to 403: score 2.8, E = 8.6
                   *->nGvlFyDRisplkplaike<-*
                      +Gv+F++ + p+  l+i++
     F21F3.1   385    DGVMFVSQLEPSRILEIRL    403



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