Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F21F3.3
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Query: F21F3.3 CE09533 protein-S isoprenylsysteine O-methyltransferase status:Partially_confirmed TR:P91266 protein_id:AAB42280.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ICMT Isoprenylcysteine carboxyl methyltransfer 435.3 5.3e-127 1
voltage_CLC Voltage gated chloride channel 2.7 8.4 1
Pox_P35 Poxvirus P35 protein 1.9 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Pox_P35 1/1 49 59 .. 331 341 .] 1.9 9.7
voltage_CLC 1/1 49 71 .. 433 455 .] 2.7 8.4
ICMT 1/1 74 289 .. 13 247 .] 435.3 5.3e-127
Alignments of top-scoring domains:
Pox_P35: domain 1 of 1, from 49 to 59: score 1.9, E = 9.7
*->FLaGaLvTyIi<-*
FL+G+L++ I+
F21F3.3 49 FLVGLLASVIV 59
voltage_CLC: domain 1 of 1, from 49 to 71: score 2.7, E = 8.4
*->nlsvilPlmvAvliaklvadslg<-*
+l +l+ +++l+a++v++s+
F21F3.3 49 FLVGLLASVIVLLVAYAVGESCE 71
ICMT: domain 1 of 1, from 74 to 289: score 435.3, E = 5.3e-127
*->lyqiamtaafLGcvfGvglllSfsHeqivlkhfgwyflfLSLFHflE
+ qi+m+aafLGc+++v l + ++He++ ++ f+ yflfLS FHf+E
F21F3.3 74 NNQILMPAAFLGCAVAVNLVYTVAHEGELWEYFSRYFLFLSVFHFSE 120
yyiTAlnNprsLslDSFLLNhskeYwlAalvswlEfLiEaGksFAkvinC
+++TAl+N+r+L +DSFLL hs +YwlAa+++w+EfLiEa
F21F3.3 121 FVFTALTNRRTLGPDSFLLKHSFGYWLAASIGWIEFLIEA---------- 160
lfFPeidLkqitwSLAtkllsvlGlllvilGeylRkvAMvtAGssFsHiV
f+Pei++ +w + G+ ++i+Ge+ Rkv+Mv+AG++F+H
F21F3.3 161 NFYPEIKMYSVLW------I---GTFGCIIGEIVRKVGMVHAGLAFTHLM 201
ankKssdHtLVtdGvYAylRHPSYvGwFyWAiGTQvLLcNPiclVvyalV
a +K+s HtL+ +G+YAy+RHP+Y+GwF+WA++TQ+ LcNPi+ V+y++V
F21F3.3 202 ARTKRSGHTLINTGIYAYMRHPGYFGWFIWAVSTQIVLCNPISFVIYTFV 251
lWkFFsdRIeeEEkyLIsFFGdsYlEYkkkVptGiPFI<-*
+W+FF+ RIe EEk+LIsFFGd+Y EY++k ++G+PF
F21F3.3 252 TWRFFANRIEIEEKDLISFFGDDYAEYQRKTWSGVPFA 289