Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F21C3.2
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Query: F21C3.2 CE17689 tyrosinase status:Partially_confirmed SW:Q19673 protein_id:CAA95805.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ShTK ShTK domain 131.5 5.3e-38 4
tyrosinase Common central domain of tyrosinase 37.8 1.1e-09 2
hemocyanin Hemocyanin, copper containing domain 9.3 0.19 1
tubulin Tubulin/FtsZ family, GTPase domain 5.9 1.2 1
SmpB SmpB protein 5.9 2.8 1
sigma70_r4 Sigma-70, region 4 5.2 9.5 1
DUF477 Protein of unknown function (DUF477) 5.0 4.6 1
RNA_pol_Rpb5_N RNA polymerase Rpb5, N-terminal domain 4.9 4.1 2
NAGLU Alpha-N-acetylglucosaminidase (NAGLU) 2.8 3.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF477 1/1 12 37 .. 1 29 [. 5.0 4.6
RNA_pol_Rpb5_N 1/2 158 168 .. 107 118 .] -0.0 1.1e+02
tubulin 1/1 212 227 .. 1 21 [. 5.9 1.2
RNA_pol_Rpb5_N 2/2 243 261 .. 1 21 [. 4.6 5.1
sigma70_r4 1/1 249 261 .. 42 54 .] 5.2 9.5
NAGLU 1/1 283 292 .. 133 142 .. 2.8 3.1
tyrosinase 1/2 281 292 .. 102 113 .. 5.1 1.4
SmpB 1/1 393 406 .. 58 71 .] 5.9 2.8
tyrosinase 2/2 405 436 .. 273 318 .. 35.7 4.2e-09
hemocyanin 1/1 412 437 .. 271 296 .] 9.3 0.19
ShTK 1/4 591 627 .. 1 44 [] 30.0 1.7e-07
ShTK 2/4 635 671 .. 1 44 [] 48.2 6e-13
ShTK 3/4 710 746 .. 1 44 [] 31.3 6.8e-08
ShTK 4/4 753 788 .. 1 44 [] 45.9 2.8e-12
Alignments of top-scoring domains:
DUF477: domain 1 of 1, from 12 to 37: score 5.0, E = 4.6
*->tvpslqgdsieeeyAdrlfdewglGrkdk<-*
t+p+ + ++ + +A++l++ew+ G d+
F21C3.2 12 TIPDKNSNDSIV-NATDLYLEWEKG--DG 37
RNA_pol_Rpb5_N: domain 1 of 2, from 158 to 168: score -0.0, E = 1.1e+02
*->ktIrvfvAeriq<-*
++Ir+ + ++iq
F21C3.2 158 PAIRIMC-NQIQ 168
tubulin: domain 1 of 1, from 212 to 227: score 5.9, E = 1.2
*->arIkVfgvgggggkhYvpRAV<-*
a Vf+ g+gg +++V
F21C3.2 212 ACLCVFFRGTGG-----NNCV 227
RNA_pol_Rpb5_N: domain 2 of 2, from 243 to 261: score 4.6, E = 5.1
*->mddEeernikRlylaRRTvlQ<-*
m+ + e +Rl a+RT++Q
F21C3.2 243 MLSDDE--RQRLHQAFRTLKQ 261
sigma70_r4: domain 1 of 1, from 249 to 261: score 5.2, E = 9.5
*->rqiehrAlrkLRk<-*
rq++h+A+r L++
F21C3.2 249 RQRLHQAFRTLKQ 261
NAGLU: domain 1 of 1, from 283 to 292: score 2.8, E = 3.1
*->gGPAFlAWaR<-*
+GPAFl+W+R
F21C3.2 283 SGPAFLPWHR 292
tyrosinase: domain 1 of 2, from 281 to 292: score 5.1, E = 1.4
*->vHesplFlpWHR<-*
+H++p+FlpWHR
F21C3.2 281 AHSGPAFLPWHR 292
SmpB: domain 1 of 1, from 393 to 406: score 5.9, E = 2.8
*->nvhIspYeqasthf<-*
n+++++Y ++++h+
F21C3.2 393 NFNVPEYTHGNPHI 406
tyrosinase: domain 2 of 2, from 405 to 436: score 35.7, E = 4.2e-09
*->HiwtGgntkynlPngisngedMgsfysaafDPIFylHHsNVDRlWs<
Hi++Gg dM + +aa+DPIF+ HHs+VD lW+
F21C3.2 405 HIYVGG--------------DMLETSTAANDPIFWMHHSFVDLLWE 436
-*
F21C3.2 - -
hemocyanin: domain 1 of 1, from 412 to 437: score 9.3, E = 0.19
*->lddysTsLRDPvFYrlhkrIdnifqe<-*
+ +sT+ DP+F++ h ++d +
F21C3.2 412 MLETSTAANDPIFWMHHSFVDLLWEM 437
[output cut off at A = 10 top alignments]