Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F21C3.2
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Query:  F21C3.2  CE17689   tyrosinase status:Partially_confirmed SW:Q19673 protein_id:CAA95805.1

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
ShTK           ShTK domain                              131.5    5.3e-38   4
tyrosinase     Common central domain of tyrosinase       37.8    1.1e-09   2
hemocyanin     Hemocyanin, copper containing domain       9.3       0.19   1
tubulin        Tubulin/FtsZ family, GTPase domain         5.9        1.2   1
SmpB           SmpB protein                               5.9        2.8   1
sigma70_r4     Sigma-70, region 4                         5.2        9.5   1
DUF477         Protein of unknown function (DUF477)       5.0        4.6   1
RNA_pol_Rpb5_N RNA polymerase Rpb5, N-terminal domain     4.9        4.1   2
NAGLU          Alpha-N-acetylglucosaminidase (NAGLU)      2.8        3.1   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
DUF477           1/1      12    37 ..     1    29 [.     5.0      4.6
RNA_pol_Rpb5_N   1/2     158   168 ..   107   118 .]    -0.0  1.1e+02
tubulin          1/1     212   227 ..     1    21 [.     5.9      1.2
RNA_pol_Rpb5_N   2/2     243   261 ..     1    21 [.     4.6      5.1
sigma70_r4       1/1     249   261 ..    42    54 .]     5.2      9.5
NAGLU            1/1     283   292 ..   133   142 ..     2.8      3.1
tyrosinase       1/2     281   292 ..   102   113 ..     5.1      1.4
SmpB             1/1     393   406 ..    58    71 .]     5.9      2.8
tyrosinase       2/2     405   436 ..   273   318 ..    35.7  4.2e-09
hemocyanin       1/1     412   437 ..   271   296 .]     9.3     0.19
ShTK             1/4     591   627 ..     1    44 []    30.0  1.7e-07
ShTK             2/4     635   671 ..     1    44 []    48.2    6e-13
ShTK             3/4     710   746 ..     1    44 []    31.3  6.8e-08
ShTK             4/4     753   788 ..     1    44 []    45.9  2.8e-12

Alignments of top-scoring domains:
DUF477: domain 1 of 1, from 12 to 37: score 5.0, E = 4.6
                   *->tvpslqgdsieeeyAdrlfdewglGrkdk<-*
                      t+p+ + ++ +  +A++l++ew+ G  d+
     F21C3.2    12    TIPDKNSNDSIV-NATDLYLEWEKG--DG    37

RNA_pol_Rpb5_N: domain 1 of 2, from 158 to 168: score -0.0, E = 1.1e+02
                   *->ktIrvfvAeriq<-*
                      ++Ir+ + ++iq
     F21C3.2   158    PAIRIMC-NQIQ    168

tubulin: domain 1 of 1, from 212 to 227: score 5.9, E = 1.2
                   *->arIkVfgvgggggkhYvpRAV<-*
                      a   Vf+ g+gg     +++V
     F21C3.2   212    ACLCVFFRGTGG-----NNCV    227

RNA_pol_Rpb5_N: domain 2 of 2, from 243 to 261: score 4.6, E = 5.1
                   *->mddEeernikRlylaRRTvlQ<-*
                      m+ + e   +Rl  a+RT++Q
     F21C3.2   243    MLSDDE--RQRLHQAFRTLKQ    261

sigma70_r4: domain 1 of 1, from 249 to 261: score 5.2, E = 9.5
                   *->rqiehrAlrkLRk<-*
                      rq++h+A+r L++
     F21C3.2   249    RQRLHQAFRTLKQ    261

NAGLU: domain 1 of 1, from 283 to 292: score 2.8, E = 3.1
                   *->gGPAFlAWaR<-*
                      +GPAFl+W+R
     F21C3.2   283    SGPAFLPWHR    292

tyrosinase: domain 1 of 2, from 281 to 292: score 5.1, E = 1.4
                   *->vHesplFlpWHR<-*
                      +H++p+FlpWHR
     F21C3.2   281    AHSGPAFLPWHR    292

SmpB: domain 1 of 1, from 393 to 406: score 5.9, E = 2.8
                   *->nvhIspYeqasthf<-*
                      n+++++Y ++++h+
     F21C3.2   393    NFNVPEYTHGNPHI    406

tyrosinase: domain 2 of 2, from 405 to 436: score 35.7, E = 4.2e-09
                   *->HiwtGgntkynlPngisngedMgsfysaafDPIFylHHsNVDRlWs<
                      Hi++Gg              dM  + +aa+DPIF+ HHs+VD lW+
     F21C3.2   405    HIYVGG--------------DMLETSTAANDPIFWMHHSFVDLLWE  436

                   -*

     F21C3.2     -    -

hemocyanin: domain 1 of 1, from 412 to 437: score 9.3, E = 0.19
                   *->lddysTsLRDPvFYrlhkrIdnifqe<-*
                      +  +sT+  DP+F++ h ++d +
     F21C3.2   412    MLETSTAANDPIFWMHHSFVDLLWEM    437

	[output cut off at A = 10 top alignments]


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