Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F20C5.2a
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Query:  F20C5.2a  CE27986  locus:klp-11 kinesin status:Confirmed TR:Q19633 protein_id:CAA92295.2

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
kinesin  Kinesin motor domain                           574.3   7.9e-169   1
Thymosin Thymosin beta-4 family                           8.7       0.59   1
GED      Dynamin GTPase effector domain                   8.2       0.42   1
ELK      ELK domain                                       6.2        3.1   1
Troponin Troponin                                         3.9        7.1   1
AFOR_N   Aldehyde ferredoxin oxidoreductase, N-termin     3.0        4.6   1
DUF260   Protein of unknown function DUF260               2.8        1.4   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
AFOR_N     1/1     298   326 ..   159   189 ..     3.0      4.6
kinesin    1/1      58   344 ..     1   373 []   574.3 7.9e-169
ELK        1/1     352   373 ..     1    22 []     6.2      3.1
Troponin   1/1     358   376 ..   168   186 .]     3.9      7.1
DUF260     1/1     358   389 ..    89   119 .]     2.8      1.4
Thymosin   1/1     419   439 ..    21    41 .]     8.7     0.59
GED        1/1     516   535 ..    78    97 .]     8.2     0.42

Alignments of top-scoring domains:
AFOR_N: domain 1 of 1, from 298 to 326: score 3.0, E = 4.6
                   *->yeTtriLkknlgkefEGMevriAcIGPAGEN<-*
                      +++tr L++ lg+     +v +AcIGPA+ N
    F20C5.2a   298    SKLTRLLQDSLGGN--SKTVMVACIGPASYN    326

kinesin: domain 1 of 1, from 58 to 344: score 574.3, E = 7.9e-169
                   *->ktFtFDkVFdpestqefvyeetakPlvesvleGyNgtiFAYGQTGSG
                      k FtFD+++d++stq + yeet ++lv+svl+GyN+tiFAYGQTG+G
    F20C5.2a    58    KDFTFDAIYDENSTQSDLYEETFRDLVDSVLNGYNATIFAYGQTGTG 104

                   KTYTMeGppdsdkegsgnptdsyttpeeepGiiPRaledlFerieerker
                   KT+TMeG+++               ++e++G+i+ +++++Fe++   +++
    F20C5.2a   105 KTHTMEGKSS---------------DPEQRGVIYKCIDHIFEHM-AASHN 138

                   kgvfPklnwellnsqetligvsfdrglssdlyvndlefsvrvSylEIYNE
                                                       e++vr+SylEIY+E
    F20C5.2a   139 -----------------------------------QEYLVRASYLEIYQE 153

                   kirDLLspsppqagspsksnekkkkpgvpLrireDpkrGgkmdgvyVeGL
                   ++rDLL+ +             ++k+   L+i+e p++G     vyV++L
    F20C5.2a   154 ELRDLLEAE-------------SNKK---LEIKERPDGG-----VYVKDL 182

                   tevpVssaeevlelLelGnknRtvasTamNerSSRSHaiFtitveqrnrd
                   t+   +++ e++e++ +Gn +R+v+ T+mNe+SSRSHaiF+itve +++
    F20C5.2a   183 TSKLTRTVGEIHEVMIRGNGHRSVGRTNMNEHSSRSHAIFIITVECSRIG 232

                   segskvtgkdnsgeesvrvskLnLVDLAGSERaskTgatGAggrRLkEga
                             ++ge++++v++LnLVDLAGSER+skTg   A+g+R+kE++
    F20C5.2a   233 ----------EDGESHITVGRLNLVDLAGSERQSKTG---ATGERFKEAT 269

                   nINkSLsaLGnVInALa.....HiPYRDSKLTrLLqDSLGGGaNsKTlMI
                   +IN+SLsaLGnVI+AL++ ++ HiPYRDSKLTrLLqDSLGG  NsKT+M+
    F20C5.2a   270 KINLSLSALGNVISALVdaksaHIPYRDSKLTRLLQDSLGG--NSKTVMV 317

                   aniSPsssrNntnyeETlsTLrFAsRAknIk<-*
                   a+i P+s+    n+eETl TLr+A+RAknIk
    F20C5.2a   318 ACIGPASY----NFEETLGTLRYANRAKNIK    344

ELK: domain 1 of 1, from 352 to 373: score 6.2, E = 3.1
                   *->eLKeeLlrKYsgylssLkeEfl<-*
                      + K+ Llr +++++  L+e +
    F20C5.2a   352    DPKDALLREFQEEIEMLREQLK    373

Troponin: domain 1 of 1, from 358 to 376: score 3.9, E = 7.1
                   *->lraekkeaesLRanlKeVk<-*
                      lr  + e e LR++lK++k
    F20C5.2a   358    LREFQEEIEMLREQLKQRK    376

DUF260: domain 1 of 1, from 358 to 389: score 2.8, E = 1.4
                   *->ieslqaeLalvkselstyrgdpqd.qvpqesp<-*
                      +++ q+e+++++++l++ ++   d+  + +++
    F20C5.2a   358    LREFQEEIEMLREQLKQRKTRSRDgATQSFYD    389

Thymosin: domain 1 of 1, from 419 to 439: score 8.7, E = 0.59
                   *->EtqEKnpLPtKEtiEqEKqae<-*
                      E qEK  L  KE iEq + ae
    F20C5.2a   419    EIQEKHDLLEKERIEQARVAE    439

GED: domain 1 of 1, from 516 to 535: score 8.2, E = 0.42
                   *->kelkkrLelLkkArqiisev<-*
                      k+lkk+L  L++Ar +i +v
    F20C5.2a   516    KKLKKMLIKLRQARNEIRDV    535



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