Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F20C5.1
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Query: F20C5.1 CE03238 locus:pme-3 status:Partially_confirmed TR:Q19637 protein_id:CAA92299.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PARG Poly (ADP-ribose) glycohydrolase (PARG 792.0 1.1e-239 1
PsbJ PsbJ 7.9 0.65 1
F-protein Negative factor, (F-Protein) or Nef 6.4 0.6 1
Ran_BP1 RanBP1 domain 5.3 3 1
Phage_portal_2 Phage portal protein, lambda family 2.9 6.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
F-protein 1/1 353 376 .. 217 240 .] 6.4 0.6
PsbJ 1/1 543 581 .. 1 39 [] 7.9 0.65
Phage_portal_2 1/1 592 607 .. 369 384 .] 2.9 6.6
PARG 1/1 356 704 .. 1 420 [] 792.0 1.1e-239
Ran_BP1 1/1 694 713 .. 108 127 .] 5.3 3
Alignments of top-scoring domains:
F-protein: domain 1 of 1, from 353 to 376: score 6.4, E = 0.6
*->vWkFDstLAyeYkAfelyPeefkd<-*
+W+FD+ y+ A e+y +e+ +
F20C5.1 353 MWEFDPDITYKLPALEMYYKEMSE 376
PsbJ: domain 1 of 1, from 543 to 581: score 7.9, E = 0.65
*->mantgRiPLWlvgtvaGlaaigvlglFfYGsysglgssl<-*
m + + + l ++ l ai+++g +++ sy+g g l
F20C5.1 543 MCPEMMVGMLLCEKMKQLEAISIVGAYVFSSYTGYGHTL 581
Phage_portal_2: domain 1 of 1, from 592 to 607: score 2.9, E = 6.6
*->RaglvEsrrrfmilqk<-*
R+ ++E+r+rf l+
F20C5.1 592 RQNTNEFRDRFGRLRV 607
PARG: domain 1 of 1, from 356 to 704: score 792.0, E = 1.1e-239
*->fDEeleaeaellLkfpslleseivnadellekiktgvRlLksakngi
fD++++ +++++L+++++++se+v+++e+lek+++++R++k+a++++
F20C5.1 356 FDPDIT-YKLPALEMYYKEMSELVGREEVLEKFARVARIAKTAEDIL 401
velSQeLIGaLLaaaFfClFPrdnrakmkleysnfPdlsFnrlyqsrssa
+e++++L+G++++a+++++++++++a+m+++++++P +sF+r+++s++s+
F20C5.1 402 PERIYRLVGDVESATLSHKQCAALVARMFFARPDSP-FSFCRILSSDKSI 450
qvEKLKclfhYFrRvsPtERDAsdvPtGaVSFeRkslekeqDSStLdeee
+vEKLK+lf+YF+++s +d+P+GaVSF++++++k++ ++ee
F20C5.1 451 CVEKLKFLFTYFDKMS------MDPPDGAVSFRLTKMDKDT-----FNEE 489
WsksdvnllPlhvtfegtiedegagaLQVDFANKyLGGGVLghGAvcVQE
W+++++++lP++++f++++++++a+++QVDFAN++LGGGVL+hG +VQE
F20C5.1 490 WKDKKLRSLPEVEFFDEMLIEDTALCTQVDFANEHLGGGVLNHG--SVQE 537
EIRFmInPELiVGmLFlevmddlEAIeIVGAErFSsYTGYASSFRFAGEY
EIRF+++PE++VGmL++e+m++lEAI+IVGA++FSsYTG
F20C5.1 538 EIRFLMCPEMMVGMLLCEKMKQLEAISIVGAYVFSSYTG----------- 576
iDKKAmDpYaktlkWavaiddlsepnvneFkDesgRREiNKALCGFLNCS
Y++tlkWa++++++s++n+neF+D++gR
F20C5.1 577 --------YGHTLKWAELQPNHSRQNTNEFRDRFGR-------------- 604
KAWEHqNiFmDEGDsvlqteivAIDAllfrgsllqcrreqLndekleREl
l++e++AIDA+lf+gs+l+c++eqLn+++++RE+
F20C5.1 605 ----------------LRVETIAIDAILFKGSKLDCQTEQLNKANIIREM 638
nkAsigFlslgvgpsnlpAvvtGnwGCGNWGCGAFgGDkpLKalIQllAa
+kAsigF+s+g++++n+p +vtG+wGCG AF+GDkpLK++IQ++Aa
F20C5.1 639 KKASIGFMSQGPKFTNIP-IVTGWWGCG-----AFNGDKPLKFIIQVIAA 682
aqadRPlvSYyTFGdeELrndcq<-*
++adRPl+ +++FG++EL+++c+
F20C5.1 683 GVADRPLH-FCSFGEPELAAKCK 704
Ran_BP1: domain 1 of 1, from 694 to 713: score 5.3, E = 3
*->FKtkEeAdeFKkkFEeaqke<-*
F+ +E A++ Kk++E +++
F20C5.1 694 FGEPELAAKCKKIIERMKQK 713