Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F19F10.9
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Query: F19F10.9 CE27372 status:Partially_confirmed TR:O01524 protein_id:AAK72085.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SART-1 SART-1 family 1510.4 0 1
DUF492 Protein of unknown function (DUF492) 6.1 0.8 1
CDtoxinC Cytolethal distending toxin C 5.2 1.7 1
TFIID-18 Transcription initiation factor IID, 18kD 5.2 3.4 1
Prothymosin Prothymosin/parathymosin family 4.9 2.4 1
MuDR MuDR family transposase 3.7 5.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TFIID-18 1/1 2 14 .. 80 93 .] 5.2 3.4
MuDR 1/1 127 138 .. 163 174 .] 3.7 5.4
DUF492 1/1 330 355 .. 304 329 .] 6.1 0.8
CDtoxinC 1/1 588 603 .. 70 85 .. 5.2 1.7
Prothymosin 1/1 610 636 .. 84 111 .] 4.9 2.4
SART-1 1/1 43 797 .. 1 824 [] 1510.4 0
Alignments of top-scoring domains:
TFIID-18: domain 1 of 1, from 2 to 14: score 5.2, E = 3.4
*->mkellkkarKqfde<-*
+++++ k+rKqfd+
F19F10.9 2 SSKYS-KKRKQFDD 14
MuDR: domain 1 of 1, from 127 to 138: score 3.7, E = 5.4
*->YskAWRakeiAv<-*
Ysk ++ak++A
F19F10.9 127 YSKVLKAKKLAD 138
DUF492: domain 1 of 1, from 330 to 355: score 6.1, E = 0.8
*->klkrefvkkdlekkikkIlkgrtein<-*
+l +ef d ++++k++kg++e n
F19F10.9 330 ELASEFYTQDEMTQFRKVKKGKKEKN 355
CDtoxinC: domain 1 of 1, from 588 to 603: score 5.2, E = 1.7
*->evKtkdkelvedpgGy<-*
e+K k+k +++d+gG+
F19F10.9 588 ELKEKEKRKLRDQGGW 603
Prothymosin: domain 1 of 1, from 610 to 636: score 4.9, E = 2.4
*->aatdKRvAEDDEDdDvetKKqKktDEDD<-*
a+ + R+ DDED e KK K ED+
F19F10.9 610 APSNARIDSDDEDALEEAKKRK-WSEDE 636
SART-1: domain 1 of 1, from 43 to 797: score 1510.4, E = 0
*->msdNsspasSsRkPAtkeRePssRsFsPiPenGdadvLSIEETNKLR
++dN++pa+S +SIEETNKLR
F19F10.9 43 PEDNGEPADS---------------------------MSIEETNKLR 62
akLGLKPLEineekekkglsdaSssqGetKedhvdedaqkYkneWwkklh
a+LGL+PLE+n++ke++++++ t+e++++ed+++++ h
F19F10.9 63 ASLGLAPLETNDNKERDANDG-------TNEKIYNEDGFEFR-------H 98
kkakNlkkkkktkeirEKLeqakekRnlkqkktkiKTLaEdDeeiDvddv
+ka+N+++kkk+k+i+EKLe+ak+kR++++k++k+K+La++Dee d++
F19F10.9 99 RKAENISDKKKEKDIKEKLEIAKAKRDVYSKVLKAKKLADSDEE---DSA 145
aaWInKmRqvenerleaderaksleeldeefgvStlvekKKKnkkpnrnd
a+++nKmRq+e+e+++a++ra+++++ldee+gvS++v+k +kkp++++
F19F10.9 146 ASFVNKMRQKEDEAKKAADRAAAFDQLDEELGVSAIVDK---VKKPKKPK 192
nygesdleGlkVeHgiedftEgdtviLTLKDkdvLdedeeDvLvNvnmvD
++g+sd++G++++Hg+e+f+Eg ++iL+L+Dk+vLd+++ +vLvN+n++D
F19F10.9 193 TKGPSDTAGMVIGHGREAFIEG-DQILVLQDKGVLDDGD-EVLVNPNLLD 240
keRkkkNVelrKenppyknYyveeEdvDDfgnqkersvlakydeeleGeq
+eR+++NVelrK+++p++n+ +EdvD+fgn+k+++vlakyde+leGeq
F19F10.9 241 NERHVRNVELRKRKDPNRNF---DEDVDEFGNAKNFGVLAKYDETLEGEQ 287
kkekrSLdvngtvdkerekrkkeketrtKlagkrlesletskyrlaseky
kk++r Ld++g+vd+e+e+r++e+++r+K+agkrleslet+ky+lase+y
F19F10.9 288 KKQFR-LDEHGGVDLEEERREMEAFRRMKMAGKRLESLETKKYELASEFY 336
skeemvkfkKrKrkkkvKkirekeawdvlkaddllPlgqGeasensDfgs
+++em++f+K+K++kk+K+ir+++ vlka+dl+P+++ a+e++Dfg+
F19F10.9 337 TQDEMTQFRKVKKGKKEKNIRKRK---VLKASDLVPVEK--AGEGRDFGR 381
rkRdsDEPEDEGLKKEKqDGKDkigrfrrdEvdeedeevekvkpvargng
r+RdsDEPEDEGLKKEKqDGKD++g+++++Ev+e++++++k+k+++rgng
F19F10.9 382 RRRDSDEPEDEGLKKEKQDGKDEDGEISDKEVPESSSDNGKWKKAMRGNG 431
vDdervqnlRsKHqiaedDdeDndllfSGGvDLtvdvedDdAeidLqkel
vD++r+q+lRsKHqiaedDd+Dndl+fSGGvDLt++v+dD+Ae++L+++l
F19F10.9 432 VDLQRLQKLRSKHQIAEDDDSDNDLMFSGGVDLTGVVIDDNAEEELSSIL 481
akdRklkQkdnkqsindpgkkveellqkeevlqmekeeeedGlvedeleg
ak+Rk+kQ+d+kq++nd+gkkv+++l++ ++++me++eeed v++++eg
F19F10.9 482 AKTRKVKQIDGKQMDNDVGKKVQDILTS-HGVKMEIDEEED--VKPLKEG 528
yIvvnattEfcrtlGeIptyglagnrdLeDdndimdfektEeesenvekl
+I++++ttE+cr++GeI+t+gl+gnr+ +D++++++++++E+e+e++e++
F19F10.9 529 QIYIDSTTEYCRHVGEITTLGLGGNRT-VDVSEVKKVKEEEMEQEGSEGF 577
sdessAKvDKELKEKEKetlenigtwlevnedEpsnARiDsDDEDALEEA
+++++AKvDKELKEKEK++l+++g+wl+++e++psnARiDsDDEDALEEA
F19F10.9 578 EKWKRAKVDKELKEKEKRKLRDQGGWLAAGEPAPSNARIDSDDEDALEEA 627
KKRKlvekqkedvdsleekegdakilDEepdvnkNigvenalklalkKgy
KKRK++e+++ed+d++e+k+++a++l++e+dv+k gv+++lkla++Kgy
F19F10.9 628 KKRKWSEDEEEDEDMEEDKDDYAPALGQEVDVSK--GVGRMLKLAGQKGY 675
LeneleknrrskkeldhLsekfyeiedkerlfGALeylktakKlnrrdki
L+n+ +++++s+++ldhL++k+++++d++r++ +++++akK++r++++
F19F10.9 676 LQNP-NAKSHSGPSLDHLKNKTTQRIDGQRFD---PDDRNAKKADRLNSQ 721
hrgpeidfkekhdYKPdVkidYvDefGreLtpKEAFRYyLShkFHGKgsG
hrgp+++f+ekhdYKPdV+i+YvD++Gre+++K+A+R +LS+kFHG+++G
F19F10.9 722 HRGPVMPFAEKHDYKPDVNISYVDRKGREMDAKDAYR-ELSYKFHGRNPG 770
KnKlEKRlkRleeeeRmkkmsSsDtpL<-*
K++lEKR++R+++eeRm+k++S+DtpL
F19F10.9 771 KKQLEKRANRKDKEERMLKTNSYDTPL 797