Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F18C12.2b
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Query: F18C12.2b CE30345 locus:rme-8 DnaJ domain status:Confirmed TR:O62178 protein_id:CAA99832.3
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DnaJ DnaJ domain 53.9 4.5e-13 1
Armadillo_seg Armadillo/beta-catenin-like repeat 11.7 0.15 1
DUF108 Domain of unknown function DUF108 4.6 1.9 1
DUF383 Domain of unknown function (DUF383) 4.5 3.9 1
ATP-synt_B ATP synthase B/B' CF(0) 4.2 6.3 1
ArfGap Putative GTP-ase activating protein f 3.8 6 1
TAFII28 hTAFII28-like protein conserved regio 3.6 7 1
DENN DENN (AEX-3) domain 3.4 6.2 1
Glycos_transf_4 Glycosyl transferase 3.1 7.2 1
ANATO Anaphylotoxin-like domain 2.3 2.7 1
Tfb2 Transcription factor Tfb2 0.7 1.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Glycos_transf_4 1/1 29 44 .. 194 209 .] 3.1 7.2
DENN 1/1 481 492 .. 185 196 .. 3.4 6.2
Armadillo_seg 1/1 929 959 .. 1 30 [. 11.7 0.15
DUF383 1/1 1293 1302 .. 215 224 .] 4.5 3.9
ANATO 1/1 1297 1302 .. 32 37 .] 2.3 2.7
ATP-synt_B 1/1 1308 1337 .. 113 143 .. 4.2 6.3
TAFII28 1/1 1319 1348 .. 65 99 .] 3.6 7
DnaJ 1/1 1341 1378 .. 17 70 .. 53.9 4.5e-13
Tfb2 1/1 1804 1813 .. 402 411 .] 0.7 1.5
DUF108 1/1 2091 2107 .. 255 271 .] 4.6 1.9
ArfGap 1/1 2094 2111 .. 1 19 [. 3.8 6
Alignments of top-scoring domains:
Glycos_transf_4: domain 1 of 1, from 29 to 44: score 3.1, E = 7.2
*->gviAvvaIlghfeitl<-*
++i+++aI++++ +tl
F18C12.2b 29 FSIGTLAITTYNPNTL 44
DENN: domain 1 of 1, from 481 to 492: score 3.4, E = 6.2
*->vhAlvaLLYPfr<-*
v+Al+aL+YP++
F18C12.2b 481 VEALCALMYPMH 492
Armadillo_seg: domain 1 of 1, from 929 to 959: score 11.7, E = 0.15
*->npenkqavveaGalppLvqLLs.pdeevqee<-*
n +n+++++ +++lp+Lv+L+ + vq++
F18C12.2b 929 NKDNVRELIISNILPLLVDLCVlAHLHVQRA 959
DUF383: domain 1 of 1, from 1293 to 1302: score 4.5, E = 3.9
*->RepDpdIrkm<-*
R+p+p++r++
F18C12.2b 1293 RDPIPFLRCC 1302
ANATO: domain 1 of 1, from 1297 to 1302: score 2.3, E = 2.7
*->aFlqCC<-*
+Fl+CC
F18C12.2b 1297 PFLRCC 1302
ATP-synt_B: domain 1 of 1, from 1308 to 1337: score 4.2, E = 6.3
*->aeLrqqvaaLAvqiaeklLkkeldeaarqer<-*
+eL+++ a ++v+ a +L ++l++++ +++
F18C12.2b 1308 NELEKKPATMSVDLAREILSVDLTNEE-HRK 1337
TAFII28: domain 1 of 1, from 1319 to 1348: score 3.6, E = 7
*->VEeArdVmd.feweesgrWmsrPiqPdHiReayrrL<-*
V +Ar++ + ++e r P +iR+ y++L
F18C12.2b 1319 VDLAREILSvDLTNEEHR------KPAFIRRQYYKL 1348
DnaJ: domain 1 of 1, from 1341 to 1378: score 53.9, E = 4.5e-13
*->IKKAYRkLAlkyHPDKNpgdpeerktleraeskeeAeekFkeIneAY
I+++Y+kLA kyHPDKNp+ e+F +In+AY
F18C12.2b 1341 IRRQYYKLAAKYHPDKNPEGR----------------EMFERINAAY 1371
evLsDpe<-*
e Ls ++
F18C12.2b 1372 ELLSSET 1378
Tfb2: domain 1 of 1, from 1804 to 1813: score 0.7, E = 1.5
*->IsYLrthAHP<-*
I+YLr + HP
F18C12.2b 1804 ITYLRCRKHP 1813
DUF108: domain 1 of 1, from 2091 to 2107: score 4.6, E = 1.9
*->lAAySvirllrnLkEnv<-*
+A S+i++l L+En
F18C12.2b 2091 SASRSAILILQELSENQ 2107
[output cut off at A = 10 top alignments]