Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F15D4.1
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Query: F15D4.1 CE15856 locus:btf-1 helicase status:Partially_confirmed TR:O45899 protein_id:CAB04949.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SNF2_N SNF2 family N-terminal domain 214.6 1.5e-60 2
helicase_C Helicase conserved C-terminal domain 81.5 1.1e-21 1
Plus-3 Plus-3 domain 6.5 1.7 1
HEAT HEAT repeat 5.2 7.2 1
tRNA_bind Putative tRNA binding domain 4.9 6.7 1
GDPD Glycerophosphoryl diester phosphodiesteras 3.2 3.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Plus-3 1/1 242 264 .. 95 117 .] 6.5 1.7
HEAT 1/1 906 929 .. 16 39 .] 5.2 7.2
GDPD 1/1 993 1013 .. 295 315 .] 3.2 3.6
SNF2_N 1/2 985 1059 .. 1 86 [. 75.7 6.7e-20
SNF2_N 2/2 1093 1262 .. 149 356 .] 139.1 7.9e-38
tRNA_bind 1/1 1346 1363 .. 84 101 .] 4.9 6.7
helicase_C 1/1 1348 1421 .. 1 72 [] 81.5 1.1e-21
Alignments of top-scoring domains:
Plus-3: domain 1 of 1, from 242 to 264: score 6.5, E = 1.7
*->nfiSNqdFtEeEfqrWkqaikng<-*
+++SN ++ +eE +++++++ +
F15D4.1 242 SILSNKEIPQEEMSQLVEKVMSH 264
HEAT: domain 1 of 1, from 906 to 929: score 5.2, E = 7.2
*->LakDeepeVRlaaaesLgklakvl<-*
L+ D +VR aa e++ l++v+
F15D4.1 906 LLADQCETVRDAAGEAFRRLIPVI 929
GDPD: domain 1 of 1, from 993 to 1013: score 3.2, E = 3.6
*->myrllklGVDgviTDrpdllr<-*
+++l+ +G +g++ D+++l++
F15D4.1 993 IRFLRTYGLHGILADDMGLGK 1013
SNF2_N: domain 1 of 2, from 985 to 1059: score 75.7, E = 6.7e-20
*->YQleGvnWLislyknlvkkendscglggILADEMGLGKTlQtIslla
YQleG+ W +l ++ gl+gILAD+MGLGKTlQt + +a
F15D4.1 985 YQLEGITWIRFLRTY---------GLHGILADDMGLGKTLQTMCSIA 1022
yllelkpkaek.rigpfLvVcPlStldnWlnEfekWapdd<-*
+ +++ e++r+ +L+VcP +++d+W+ E +++p +
F15D4.1 1023 LSVDRDEMSEFhRC--SLIVCPRTLVDHWCLEWNRFFP-Q 1059
SNF2_N: domain 2 of 2, from 1093 to 1262: score 139.1, E = 7.9e-38
*->wdylilDEgHHrlKNedSklrkskalnklkhtrnRLlLTGTPlQNnL
w+y++lDEg H+++N Sklr +k +l + RL+L+GTP QN+
F15D4.1 1093 WNYIVLDEG-HVMRN--SKLRAWKFASQLV-GKSRLILSGTPVQNSP 1135
kElwsLlnFlmPgiFgsleeyindgksFdkwfnnpilegrdsavLadasl
++lwsL+ lmPg +gs k+F+ +f ++i+ r +a+
F15D4.1 1136 ADLWSLFAWLMPGYLGSE-------KQFRSQFLKKIMKCRL----PKAN- 1173
aLrrkkdveeglkllnrLhkilkpflLRRlkkdveksLpppeKteyvlfc
+ d + g +++ +Lhk++ pf+ RRlk++v+k Lp K ++ ++c
F15D4.1 1174 ----EADLKAGSAAISQLHKLVLPFVMRRLKTEVLKELPE--KNVQDYEC 1217
klsklQkelYkkflkgeskdvkaindserreggkeknegksrllnlimqL
+l++ Qke+Y+ + ++ + +d g s+l li+ L
F15D4.1 1218 ELTEDQKEIYRFVV---DRCTSSQED-----V------GLSSLVTLIT-L 1252
rKicNfHPyLf<-*
rK+ + H L+
F15D4.1 1253 RKLTD-HTKLV 1262
tRNA_bind: domain 1 of 1, from 1346 to 1363: score 4.9, E = 6.7
*->gekvelleppadvppGtr<-*
g+ v l+++++vp+G+r
F15D4.1 1346 GSVVSHLVLDGSVPAGDR 1363
helicase_C: domain 1 of 1, from 1348 to 1421: score 81.5, E = 1.1e-21
*->gikvarlhGglsqeeReeilekFrngks..kvLvaTdvaarGiDipd
+++++l+G+ ++ +R++++++F+++k+ ++++++T v+++G+++++
F15D4.1 1348 VVSHLVLDGSVPAGDRMKMVNRFNEDKTidVLILTTHVGGVGLNLTG 1394
vnlVInydlpwnpesyiQRiGRaGRaG<-*
+++VI++d +wnp ++Q+i+Ra+R G
F15D4.1 1395 ADTVIFLDHDWNPMKDLQAIDRAHRLG 1421