Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F15C11.1
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Query: F15C11.1 CE17673 locus:sem-4 Zinc finger, C2H2 type (7 domains) status:Confirmed TR:Q17396 protein_id:CAA95798.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
zf-C2H2 Zinc finger, C2H2 type 121.5 1.6e-32 8
Integrase_Zn Integrase Zinc binding domain 4.7 7.2 1
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 3.6 2.4 2
DUF282 Caenorhabditis protein of unknown fun 0.7 9.8 1
DNA_pol_viral_N DNA polymerase (viral) N-terminal dom 0.4 6.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DNA_pol_viral_N 1/1 81 113 .. 320 352 .. 0.4 6.8
zf-C2H2 1/8 99 124 .. 1 24 [] 12.9 0.37
zf-C2H2 2/8 131 150 .. 1 21 [. 7.6 8.2
zf-C2H2 3/8 305 327 .. 1 24 [] 4.9 37
zf-C3HC4 1/2 320 338 .. 35 50 .] 1.8 11
zf-C2H2 4/8 333 355 .. 1 24 [] 31.4 9.4e-06
zf-C3HC4 2/2 409 416 .. 41 50 .] 2.5 6.1
Integrase_Zn 1/1 411 420 .. 31 40 .] 4.7 7.2
zf-C2H2 5/8 411 433 .. 1 24 [] 17.7 0.024
zf-C2H2 6/8 589 611 .. 1 24 [] 28.8 4.2e-05
zf-C2H2 7/8 617 639 .. 1 24 [] 32.4 5.2e-06
DUF282 1/1 703 709 .. 1 7 [. 0.7 9.8
zf-C2H2 8/8 701 723 .. 1 24 [] 17.4 0.03
Alignments of top-scoring domains:
DNA_pol_viral_N: domain 1 of 1, from 81 to 113: score 0.4, E = 6.8
*->agvepssigtgqttasrsaScshqSrvRkkays<-*
a+ ++ss++ + +tas ++Sc +qS + + +++
F15C11.1 81 AQLGNSSSRNVSSTASTTSSCPIQSCSQSFSSP 113
zf-C2H2: domain 1 of 8, from 99 to 124: score 12.9, E = 0.37
*->ykCpf.dCgksFsrksnLkrHlrt.H<-*
+Cp++ C +sFs+++ L+ H H
F15C11.1 99 SSCPIqSCSQSFSSPAALTWHVLDaH 124
zf-C2H2: domain 2 of 8, from 131 to 150: score 7.6, E = 8.2
*->ykCpfdCgksFsrksnLkrHl<-*
++C+ +C ++Fs+ + + H+
F15C11.1 131 FSCD-VCTTTFSNGQDIREHK 150
zf-C2H2: domain 3 of 8, from 305 to 327: score 4.9, E = 37
*->ykCpfdCgksFsrksnLkrHlrtH<-*
+C C ++ s ks L++H rtH
F15C11.1 305 NQCI-LCRRVLSCKSALQMHYRTH 327
zf-C3HC4: domain 1 of 2, from 320 to 338: score 1.8, E = 11
*->lerWls.....gnttvkCplC<-*
l+ ++++++++++++ C +C
F15C11.1 320 LQMHYRthtgeRPFK--CKIC 338
zf-C2H2: domain 4 of 8, from 333 to 355: score 31.4, E = 9.4e-06
*->ykCpfdCgksFsrksnLkrHlrtH<-*
+kC+ +C+++F++k+nLk+H+ +H
F15C11.1 333 FKCK-ICQRAFTTKGNLKTHMGVH 355
zf-C3HC4: domain 2 of 2, from 409 to 416: score 2.5, E = 6.1
*->gnttvkCplC<-*
++++ Cp+C
F15C11.1 409 ASQQ--CPIC 416
Integrase_Zn: domain 1 of 1, from 411 to 420: score 4.7, E = 7.2
*->qsCpkCqqkg<-*
q+Cp Cqq+
F15C11.1 411 QQCPICQQRF 420
zf-C2H2: domain 5 of 8, from 411 to 433: score 17.7, E = 0.024
*->ykCpfdCgksFsrksnLkrHlrtH<-*
+Cp +C+++F + ++L H+ H
F15C11.1 411 QQCP-ICQQRFLNAGELAVHITEH 433
zf-C2H2: domain 6 of 8, from 589 to 611: score 28.8, E = 4.2e-05
*->ykCpfdCgksFsrksnLkrHlrtH<-*
++C +C k Fs++s L+ H+rtH
F15C11.1 589 HQCG-VCFKHFSSSSALQIHMRTH 611
[output cut off at A = 10 top alignments]