Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F15B10.2
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Query: F15B10.2 CE16988 locus:drh-1 status:Confirmed TR:O44165 protein_id:AAB88350.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
helicase_C Helicase conserved C-terminal domain 68.0 7.5e-18 1
DEAD DEAD/DEAH box helicase 37.0 2.2e-10 1
zf-CSL CSL zinc finger 7.9 0.74 1
Enterotoxin_B Heat-labile enterotoxin beta chain 7.8 0.36 1
cdc48_N Cell division protein 48 (CDC48), N-ter 4.1 8.1 1
GSPII_E Type II/IV secretion system protein 3.7 2.6 1
Pept_C1-like Peptidase C1-like family 0.7 9.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Pept_C1-like 1/1 47 72 .. 1 26 [. 0.7 9.6
GSPII_E 1/1 311 322 .. 153 164 .. 3.7 2.6
Enterotoxin_B 1/1 395 408 .. 1 14 [. 7.8 0.36
DEAD 1/1 283 412 .. 1 130 [. 37.0 2.2e-10
zf-CSL 1/1 783 794 .. 61 72 .] 7.9 0.74
helicase_C 1/1 729 810 .. 1 72 [] 68.0 7.5e-18
cdc48_N 1/1 947 965 .. 69 88 .] 4.1 8.1
Alignments of top-scoring domains:
Pept_C1-like: domain 1 of 1, from 47 to 72: score 0.7, E = 9.6
*->eLtseklekfsknfnadPknqvaqna<-*
+ se ++fsk ++ d kn +na
F15B10.2 47 KIQSENAQEFSKQLYHDLKNSILSNA 72
GSPII_E: domain 1 of 1, from 311 to 322: score 3.7, E = 2.6
*->LVTGPTGSGKTt<-*
+VT PTGSGKT+
F15B10.2 311 IVTAPTGSGKTV 322
Enterotoxin_B: domain 1 of 1, from 395 to 408: score 7.8, E = 0.36
*->aPqniteLCaEYhn<-*
+Pq i +LC E +n
F15B10.2 395 TPQMIVNLCNEHRN 408
DEAD: domain 1 of 1, from 283 to 412: score 37.0, E = 2.2e-10
*->kalkklgfekptpiQaeaipailegrDvlvqApTGSGKTlAfllPil
++++++ ++ +Q+e +l+g++ +v ApTGSGKT++++ i
F15B10.2 283 QRIHRQRQLCLRNYQEELCQVALQGKNTIVTAPTGSGKTVIAANIIK 329
eallkg......pqalvlaPTRELAnQiyeelkklgkgl.lrvalltggs
e++ ++++++++++al ++P nQ++ +++++ + + + s
F15B10.2 330 EHFESRssegkrFKALFMTPNSMILNQQAASISSYLDHVyHTQIIQG--S 377
kkeqrrklrkgpdilvaTPgrlldhlengkllekrlslkn<-*
+ + r ++ d++vaTP ++ + r sl++
F15B10.2 378 DNVPTRNVIQSKDLIVATPQMIVNLCNEH-----RNSLDD 412
zf-CSL: domain 1 of 1, from 783 to 794: score 7.9, E = 0.74
*->psCSLiikViyd<-*
p+CSL+ik +y+
F15B10.2 783 PECSLVIKYNYA 794
helicase_C: domain 1 of 1, from 729 to 810: score 68.0, E = 7.5e-18
*->gikvarlhG...........glsqeeReeilekFrngkskvLvaTdv
gik + G ++++ ++ + + s+++++e l+ F +g++++Lv+T+v
F15B10.2 729 GIKSEWMSGlnkstassadiSASKQKQMEKLKMFADGEIRILVSTSV 775
aarGiDipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
a++G+D+p+++lVI y++ n +QR+GR GRa
F15B10.2 776 AEEGLDVPECSLVIKYNYATNEIAHVQRRGR-GRAL 810
cdc48_N: domain 1 of 1, from 947 to 965: score 4.1, E = 8.1
*->RkNagvsiGDeVtVrpkadv<-*
R N+g+ +G+ ++V +d
F15B10.2 947 RENCGLKLGQLIEVN-TVDL 965