Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F15A8.5
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Query: F15A8.5 CE09403 G-protein coupled receptor status:Partially_confirmed TR:O02146 protein_id:AAB52847.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
7tm_1 7 transmembrane receptor (rhodopsin family 232.3 1.3e-74 1
DoxD DoxD-like family 4.7 8.1 1
FdhE Protein involved in formate dehydrogenase 4.5 2.6 1
Competence Competence protein 3.5 8.6 1
Nuclease S1/P1 Nuclease 2.1 8.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Competence 1/1 15 34 .. 273 292 .] 3.5 8.6
DoxD 1/1 65 115 .. 74 135 .] 4.7 8.1
Nuclease 1/1 309 321 .. 303 315 .] 2.1 8.2
7tm_1 1/1 33 340 .. 1 275 [] 232.3 1.3e-74
FdhE 1/1 329 340 .. 296 307 .] 4.5 2.6
Alignments of top-scoring domains:
Competence: domain 1 of 1, from 15 to 34: score 3.5, E = 8.6
*->llllllallslllllllrll<-*
l++ ll+l+s+l++l+l ++
F15A8.5 15 LQWPLLGLFSVLIILALFGN 34
DoxD: domain 1 of 1, from 65 to 115: score 4.7, E = 8.1
*->laAlvlavfmlvAiflvHwpaWsptdsgfflgangyelallllagfl
l+++++++f +v l wp+ g f+++ ++++ + +++
F15A8.5 65 LVSVLVMLFAAVNDILGYWPF------GQFYCQFWISFDITTCTASI 105
aLalaGaGrllSLDr<-*
+ ++a SLDr
F15A8.5 106 LNLCA----I-SLDR 115
Nuclease: domain 1 of 1, from 309 to 321: score 2.1, E = 8.2
*->LAaiLNrifsses<-*
L+a+L +ifss++
F15A8.5 309 LRAWLPEIFSSKT 321
7tm_1: domain 1 of 1, from 33 to 340: score 232.3, E = 1.3e-74
*->GNlLVilvilrtkklr.tptnifilNLAvADLLflltlppwalyylv
GNlLV+++il+ ++lr+ p n+f+++LAv+DLL++++++++a+++ +
F15A8.5 33 GNLLVCAAILWDRSLRkQPENLFLVSLAVSDLLVSVLVMLFAAVNDI 79
ggsedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrr
g +WpfG++ C +++++d+++++aSil+L+aIS+DRY+ I +P+ y r
F15A8.5 80 LG--YWPFGQFYCQFWISFDITTCTASILNLCAISLDRYWHISRPMVYIR 127
rrtsprrAkvvillvWvlalllslPpl...lfswvktveegngtlnvnvt
+++ +rr + vi+lvW++++ ++ pl+ +++s+v+ ++ ++
F15A8.5 128 YCN-RRRINYVIVLVWLISAGIGAAPLgfgFGSKVTINNLTG------LP 170
vClidfpeestasvstwlvsyvllstlvgFllPllvilvcYtrIlrtlrk
vC + p + y++ s++v+F+lP v++++Yt + +rk
F15A8.5 171 VCEMRLPLP-----------YAIGSSMVSFFLPAMVMVILYTKLYLYARK 209
rarkgas...........................................
++r+++++ ++ ++ + +++ ++ + + +++ ++ +
F15A8.5 210 HVRSIKTqlqqatsflimqlasekireviiyfhfldapsrivfqqfsmfa 259
.............kkrsskerkaak...tllvvvvvFvlCWlPyfivlll
++++++ ++ r ++ ka + + tl+v++++F++CWlP+f v++l
F15A8.5 260 fyiflprsestvrQTRIVSKSKASFfslTLGVIMGTFLVCWLPFFTVNIL 309
dtlc.lsiimsstCelervlptallvtlwLayvNsclNPiIY<-*
+++ ++ + + +++ +wL+y+Ns NP+IY
F15A8.5 310 RAWLpEI-----------FSSKTIMAVTWLGYANSSANPLIY 340
FdhE: domain 1 of 1, from 329 to 340: score 4.5, E = 2.6
*->GfaRsslNpflf<-*
G+a ss Np+++
F15A8.5 329 GYANSSANPLIY 340