Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F15A8.5
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Query:  F15A8.5  CE09403   G-protein coupled receptor status:Partially_confirmed TR:O02146 protein_id:AAB52847.1

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
7tm_1      7 transmembrane receptor (rhodopsin family   232.3    1.3e-74   1
DoxD       DoxD-like family                               4.7        8.1   1
FdhE       Protein involved in formate dehydrogenase      4.5        2.6   1
Competence Competence protein                             3.5        8.6   1
Nuclease   S1/P1 Nuclease                                 2.1        8.2   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
Competence   1/1      15    34 ..   273   292 .]     3.5      8.6
DoxD         1/1      65   115 ..    74   135 .]     4.7      8.1
Nuclease     1/1     309   321 ..   303   315 .]     2.1      8.2
7tm_1        1/1      33   340 ..     1   275 []   232.3  1.3e-74
FdhE         1/1     329   340 ..   296   307 .]     4.5      2.6

Alignments of top-scoring domains:
Competence: domain 1 of 1, from 15 to 34: score 3.5, E = 8.6
                   *->llllllallslllllllrll<-*
                      l++ ll+l+s+l++l+l ++
     F15A8.5    15    LQWPLLGLFSVLIILALFGN    34

DoxD: domain 1 of 1, from 65 to 115: score 4.7, E = 8.1
                   *->laAlvlavfmlvAiflvHwpaWsptdsgfflgangyelallllagfl
                      l+++++++f +v   l  wp+      g f+++    ++++ + +++
     F15A8.5    65    LVSVLVMLFAAVNDILGYWPF------GQFYCQFWISFDITTCTASI 105

                   aLalaGaGrllSLDr<-*
                   + ++a      SLDr
     F15A8.5   106 LNLCA----I-SLDR    115

Nuclease: domain 1 of 1, from 309 to 321: score 2.1, E = 8.2
                   *->LAaiLNrifsses<-*
                      L+a+L +ifss++
     F15A8.5   309    LRAWLPEIFSSKT    321

7tm_1: domain 1 of 1, from 33 to 340: score 232.3, E = 1.3e-74
                   *->GNlLVilvilrtkklr.tptnifilNLAvADLLflltlppwalyylv
                      GNlLV+++il+ ++lr+ p n+f+++LAv+DLL++++++++a+++ +
     F15A8.5    33    GNLLVCAAILWDRSLRkQPENLFLVSLAVSDLLVSVLVMLFAAVNDI 79

                   ggsedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrr
                    g  +WpfG++ C +++++d+++++aSil+L+aIS+DRY+ I +P+ y r
     F15A8.5    80 LG--YWPFGQFYCQFWISFDITTCTASILNLCAISLDRYWHISRPMVYIR 127

                   rrtsprrAkvvillvWvlalllslPpl...lfswvktveegngtlnvnvt
                   +++ +rr + vi+lvW++++ ++  pl+ +++s+v+ ++ ++
     F15A8.5   128 YCN-RRRINYVIVLVWLISAGIGAAPLgfgFGSKVTINNLTG------LP 170

                   vClidfpeestasvstwlvsyvllstlvgFllPllvilvcYtrIlrtlrk
                   vC +  p +           y++ s++v+F+lP  v++++Yt  +  +rk
     F15A8.5   171 VCEMRLPLP-----------YAIGSSMVSFFLPAMVMVILYTKLYLYARK 209

                   rarkgas...........................................
                   ++r+++++ ++ ++    +  +++ ++     +  + +++   ++ +
     F15A8.5   210 HVRSIKTqlqqatsflimqlasekireviiyfhfldapsrivfqqfsmfa 259

                   .............kkrsskerkaak...tllvvvvvFvlCWlPyfivlll
                        ++++++ ++ r  ++ ka + + tl+v++++F++CWlP+f v++l
     F15A8.5   260 fyiflprsestvrQTRIVSKSKASFfslTLGVIMGTFLVCWLPFFTVNIL 309

                   dtlc.lsiimsstCelervlptallvtlwLayvNsclNPiIY<-*
                   +++ ++            +  + +++ +wL+y+Ns  NP+IY
     F15A8.5   310 RAWLpEI-----------FSSKTIMAVTWLGYANSSANPLIY    340

FdhE: domain 1 of 1, from 329 to 340: score 4.5, E = 2.6
                   *->GfaRsslNpflf<-*
                      G+a ss Np+++
     F15A8.5   329    GYANSSANPLIY    340



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