Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F14H8.1
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Query:  F14H8.1  CE23653   oxysterol-binding protein status:Partially_confirmed TR:Q93485 protein_id:CAB02934.2

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
Oxysterol_BP Oxysterol-binding protein                  201.7    1.2e-56   2
Ran_BP1      RanBP1 domain                                4.1        6.6   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Oxysterol_BP   1/2      28    98 ..    22    93 ..    46.6  5.8e-12
Ran_BP1        1/1     395   413 ..   109   127 .]     4.1      6.6
Oxysterol_BP   2/2     136   446 ..    97   440 .]   151.8  1.2e-41

Alignments of top-scoring domains:
Oxysterol_BP: domain 1 of 2, from 28 to 98: score 46.6, E = 5.8e-12
                   *->kdltrRldipeeslspisLwsisqlwvGkdLskitlPvfinEpkSmL
                      + +tr l + + +   +s w i + + Gkd s++t Pvf nEp+S L
     F14H8.1    28    GQRTR-LPATYIAPEDVSIWDIIRPNLGKDFSRFTVPVFMNEPLSFL 73

                   qrvtedleYpelLdkAaaredsltr<-*
                   qr++e  +Y  lL kAa++ d  +r
     F14H8.1    74 QRLSENVQYNYLLEKAAKCSDDMER    98

Ran_BP1: domain 1 of 1, from 395 to 413: score 4.1, E = 6.6
                   *->KtkEeAdeFKkkFEeaqke<-*
                      ++ +eA+eFK k Ee q+e
     F14H8.1   395    GKNDEAEEFKHKYEEEQRE    413

Oxysterol_BP: domain 2 of 2, from 136 to 446: score 151.8, E = 1.2e-41
                   *->yvaastlssysettrrvkKPlNPlLGEtFelkrendElpnkgqyrll
                      yvaa+ l+  s   +r++KP+NPlL EtFel r      +    r+l
     F14H8.1   136    YVAAFALATVSANHKRLSKPFNPLLLETFELERN-----G---VRFL 174

                   sEQVSHHPPvsAffaespkskwrvqgevqikskFlGkslavmkeGltvht
                   +EQVSHHPP+sA +aes++   +v g+v ++ +F+ + l++++    + +
     F14H8.1   175 AEQVSHHPPISAVYAESDE--FTVEGTVEPTLGFWMTKLLANPHAH-LKL 221

                   ildikdingkpEtYtwtqPnttveGILvGkpfvElSGdesvinsstGdkc
                    ++ ++     EtY+w+ P   + ++++Gk+++     ++ i ss  + +
     F14H8.1   222 TFKKTG-----ETYSWSAPKCAIYNVIMGKMYMNF-TSHMKIESSGTYDA 265

                   vIeFktkGyfS..GkkdsfkgrivkdpdgnkdKEkklytlsGkWndsmyi
                   v  F+ kGy  ++G+   ++g i+    g k+K k+ly   G W+
     F14H8.1   266 VFSFDNKGYYNhkGGDVHVEGHIF---EG-KNKIKALY---GNWTLFLAS 308

                   kKvqsksegelflDa..hktphealkvrpLeeqhelesrkaWkkvadalk
                    + +  +  +  +++  ++t  e  ++++  +     s+ +W  +  +++
     F14H8.1   309 CDNEDFKHHRKEYLRmfNETVSEKDQGPVVPG-----SKILWVSNQIPKL 353

                   ...vgnltvftktkneleerqRpllkptesrgvedqralfkrledkedld
                    ++++ +t ft+ +ne  +      +pt+sr++ d  al+ +  d
     F14H8.1   354 fddQFHFTNFTLSLNEMYPGMSDTVAPTDSRRRKDMKALEDGKNDE---- 399

                   keekkekpeaddkerkqkgslyepkwfvpsgqpvtdKeklyikarkeyWe
                   +ee k+k e++++er++      p wf++     +  ++  + + + yW
     F14H8.1   400 AEEFKHKYEEEQRERRTTKTGDVPMWFAK-----N--DEGHWAYKGGYWD 442

                   frKk<-*
                   ++
     F14H8.1   443 RDYS    446



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