Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F14H12.3
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Query: F14H12.3 CE07063 status:Confirmed TR:Q966K7 protein_id:AAK68325.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
tsp_1 Thrombospondin type 1 domain 75.8 3.8e-21 3
Antistasin Antistasin family 3.6 6.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
tsp_1 1/3 40 79 .. 1 48 [. 9.7 0.2
Antistasin 1/1 116 124 .. 19 30 .] 3.6 6.4
tsp_1 2/3 92 139 .. 1 53 [] 43.7 1.5e-11
tsp_1 3/3 143 189 .. 1 53 [] 38.2 6.5e-10
Alignments of top-scoring domains:
tsp_1: domain 1 of 3, from 40 to 79: score 9.7, E = 0.2
*->spWseWSpCSVTCGkGirtRqRtcnspaPqkkggkpCtgdaqeEtea
s W+eWS+CS G ++tR+R c +++C g + E+++
F14H12.3 40 SGWTEWSSCSAAFGTPVQTRTRLCP--------SGNCQGGSTTESKP 78
C<-*
C
F14H12.3 79 C 79
Antistasin: domain 1 of 1, from 116 to 124: score 3.6, E = 6.4
*->enGCpAiatCkC<-*
+nGC tC C
F14H12.3 116 NNGCS---TCQC 124
tsp_1: domain 2 of 3, from 92 to 139: score 43.7, E = 1.5e-11
*->spWseWSpCSVTCGkGirtRqRtcnspaPqkkggkpCtgdaqeEtea
+ W+ WS+CS TCG+G++tR+R+cn+ +C g a e ++a
F14H12.3 92 GAWGGWSSCSATCGGGTMTRSRVCNNG----CSTCQCVGAAAE-SQA 133
CmmdkC<-*
C++++C
F14H12.3 134 CNAQPC 139
tsp_1: domain 3 of 3, from 143 to 189: score 38.2, E = 6.5e-10
*->spWseWSpCSVTCG.kGirtRqRtcnspaPqkkggkpCtgdaqeEte
+ Ws WS+CSVTCG++G+ tR+R c+ +g+ Ctg +e e
F14H12.3 143 TAWSSWSACSVTCGsGGSITRSRQCS-------CGSGCTGGSVE-QE 181
aC.mmdkC<-*
+C+ + C
F14H12.3 182 PCpQQAAC 189