Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F14F3.2
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Query: F14F3.2 CE31478 ankyrin motif status:Partially_confirmed TR:Q19467 protein_id:CAA90184.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ArfGap Putative GTP-ase activating protein for Arf 175.5 1.5e-50 1
ank Ankyrin repeat 35.4 2.8e-08 2
bZIP bZIP transcription factor 8.8 0.56 1
CG-1 CG-1 domain 3.3 6.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CG-1 1/1 64 77 .. 111 126 .] 3.3 6.4
ArfGap 1/1 4 127 .. 1 138 [] 175.5 1.5e-50
ank 1/2 137 164 .. 6 33 .] 3.8 27
ank 2/2 166 198 .. 1 33 [] 31.8 3e-07
bZIP 1/1 443 479 .. 29 65 .] 8.8 0.56
Alignments of top-scoring domains:
CG-1: domain 1 of 1, from 64 to 77: score 3.3, E = 6.4
*->deelehIVLVHYleVk<-*
dee hI LVH l+++
F14F3.2 64 DEE--HIRLVHALNTS 77
ArfGap: domain 1 of 1, from 4 to 127: score 175.5, E = 1.5e-50
*->qrvlklLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn
+++l+l++sl+ +k+C DCg+ ++++WaSv+ G+++C eC+++H +
F14F3.2 4 AEALDLITSLE--QKECDDCGK-KEVEWASVKKGTVICSECFCFHSY 47
LfGvHiSkVnvRSltLDtWtpeeLrklesckgGNenansfwEsnlddfsl
L G+ +S+ R+l++ +W++e++r+++ +++++n+n++wEs l++ s+
F14F3.2 48 L-GPSVSYL--RHLRKSAWDEEHIRLVH--ALNTSNTNMIWESALYEGST 92
kpkdsdaaavKCqddrqkyesfiaaKYeeklfrvlkeskee<-*
k+++++a qd+ +++e+f+++KYe+++f ++k++k+e
F14F3.2 93 KFQKPMA-----QDPSHIKEQFVKEKYEKLTF-QPKRGKDE 127
ank: domain 1 of 2, from 137 to 164: score 3.8, E = 27
*->LHlAakrgnlevvklLlqrGAdlnaqdd<-*
L a+++ ++v +L+ GAd+n +d
F14F3.2 137 LIACARSDFAHVTLRLIALGADVNYPDP 164
ank: domain 2 of 2, from 166 to 198: score 31.8, E = 3e-07
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
G+T+LH+Aa+ gn + v+lL +GAd+ a+++
F14F3.2 166 TGDTALHVAAREGNSNQVELLFLYGADIMAPNR 198
bZIP: domain 1 of 1, from 443 to 479: score 8.8, E = 0.56
*->eeLeekveeLeaeNkaLrkelerLkkevakLksenee<-*
eeL+ v +L a+N L +el + ++ ++Lk n++
F14F3.2 443 EELTKLVHSLQAQNINLNSELITFRDDLYNLKRTNMT 479