Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F14D12.5
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Query: F14D12.5 CE27963 sulfate transporter status:Partially_confirmed TR:Q19447 protein_id:AAA82335.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Sulfate_transp Sulfate transporter family 462.5 3.6e-135 1
STAS STAS domain 94.1 4.9e-27 1
Bindin Bindin 6.1 0.91 1
Pox_I3 Poxvirus I3 ssDNA-binding protein 4.4 2 1
UPF0126 UPF0126 domain 4.2 9.6 1
Fragilysin Fragilysin metallopeptidase (M10C) ent 2.1 8.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Fragilysin 1/1 50 63 .. 306 319 .. 2.1 8.6
Bindin 1/1 65 79 .. 1 15 [. 6.1 0.91
Pox_I3 1/1 128 154 .. 1 27 [. 4.4 2
UPF0126 1/1 414 434 .. 66 88 .] 4.2 9.6
Sulfate_transp 1/1 164 479 .. 1 328 [] 462.5 3.6e-135
STAS 1/1 502 624 .. 1 116 [] 94.1 4.9e-27
Alignments of top-scoring domains:
Fragilysin: domain 1 of 1, from 50 to 63: score 2.1, E = 8.6
*->wigsynvNntasdF<-*
wigsy +Nn asdF
F14D12.5 50 WIGSYQINNFASDF 63
Bindin: domain 1 of 1, from 65 to 79: score 6.1, E = 0.91
*->yGnmqGGygYPQAmn<-*
+G ++G y+ PQAm+
F14D12.5 65 AGLTMGVYNVPQAMS 79
Pox_I3: domain 1 of 1, from 128 to 154: score 4.4, E = 2
*->tvsvrkdeeedsrfTCvsvvEyAKSLS<-*
++ + +e++ +fT v+++E SL+
F14D12.5 128 KKMLKFRNENPEKFTSVQAIEIVTSLC 154
UPF0126: domain 1 of 1, from 414 to 434: score 4.2, E = 9.6
*->alagallvfltalakllarfral<-*
++++a+++++ l ++l+++++l
F14D12.5 414 CILSAIVIVV--LESMLRKCTVL 434
Sulfate_transp: domain 1 of 1, from 164 to 479: score 462.5, E = 3.6e-135
*->lGllRLGfLveflSravisGFmaGaAilIllsQLkgllGlsnlftrh
+ ++R+ + ++fl ++is+ + +a+++ ++sQ+++l+G+s++ +r+
F14D12.5 164 MAIFRCDKPMKFLGAPAISAITFSACFFGVVSQIPKLCGFSVP-SRN 209
sgivsvlralfdlvdnlhdflkwnwatlvigisfLifLliikllpn.pkk
++++s++++++d+++n+h k n atl+i++s+L+fL + ++++++k
F14D12.5 210 EHWFSLVHSILDIFENCH---KSNTATLCISASALVFLIGSRIFIEpFFK 256
rkkklfwvpapapLvavilaTlisylfnrhkladrygvsivGeipsGlpp
++kkl+ +p+p++L+ +++aT +sy+f+ + +r+gv++++ +p+G+p
F14D12.5 257 NHKKLQSIPFPKELITIVIATSASYFFD---FEHRFGVKTLHTVPRGFPY 303
pslPrlnlspstlldllpialalAlvgllesiltaksfakikgykiDsNk
p++Pr++++p +++d+l+i A+v++++++++++ fa++++y+iDsN+
F14D12.5 304 PDVPRIDIWPYIFQDALSI----AVVAYAVTMAMGQEFATKHRYRIDSNQ 349
ELvAqGiaNIvgslfggypatgsfsRSavNvkaGakTqLSgivmavvvll
EL+A+G+ NI +s+f+++p+++sfsR++vN+++GakTqLSgi++a++++l
F14D12.5 350 ELLALGFINIGSSFFSVFPTSASFSRTLVNERSGAKTQLSGITSACFMAL 399
vlLfltplleyiPmavLaaIiivaligmLidwselirllwklsklDfliw
v+ ++p+l+ +P ++L+aI+iv+l +mL+++ l++ lw++sk+Df+iw
F14D12.5 400 VITTIGPYLASLPSCILSAIVIVVLESMLRKCTVLPG-LWRCSKHDFWIW 448
latffgtvfvdNleiGvlvGVaiSllflilrv<-*
++t ++t+ d +++Gv++G++ +++++++++
F14D12.5 449 IITAVVTLSSD-IAQGVAAGIFTAIFTIAIQS 479
STAS: domain 1 of 1, from 502 to 624: score 94.1, E = 4.9e-27
*->yieaetipgievlilrlsGpLdfanae.lkerllraiaegperk...
++++et +i +r+++pL fan+e++ +++++ + +++++++ +
F14D12.5 502 SLAKETSFRI----IRFDAPLIFANVEkFLDNVRDSTSATTKKRsas 544
.....kielrhvilDlsaVsfiDssGlgaLlelykelkkrGvelvLvgps
+++++ie++++ilD+ + + Ds+G++a +++ +el+++ + l++++++
F14D12.5 545 cdsqeDIEWSAIILDCHTWIYTDSMGIAAVKQINEELRQIRILLLFANLK 594
pevrrtleltGlddligke..kifptvaeA<-*
++rr ++Gl + ++++++++p++++A
F14D12.5 595 SSLRRQYGNAGLIGEGNIGrnQMYPSIQDA 624