Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F13E6.2
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Query: F13E6.2 CE31475 adenylate kinase like status:Partially_confirmed TR:O17803 protein_id:CAA15625.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Dpy-30 Dpy-30 motif 60.2 8e-15 1
ADK Adenylate kinase 43.9 4.9e-11 3
DHHA1 DHHA1 domain 5.3 4.1 1
MR_MLE Mandelate racemase / muconate lactonizing en 2.4 9.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Dpy-30 1/1 6 48 .. 1 42 [] 60.2 8e-15
ADK 1/3 174 182 .. 1 9 [. -0.6 1.3e+02
DHHA1 1/1 168 200 .. 1 30 [. 5.3 4.1
ADK 2/3 230 293 .. 51 119 .. 21.6 8e-05
MR_MLE 1/1 299 313 .. 262 276 .] 2.4 9.3
ADK 3/3 518 677 .. 1 152 [] 19.4 0.00034
Alignments of top-scoring domains:
Dpy-30: domain 1 of 1, from 6 to 48: score 60.2, E = 8e-15
*->paRqYLnqtVaPiLlqGLte.lAkeRPeDPiefLAeyLlknnn<-*
+aR+YL+++++P+L++GL+++l+++RP+DP++fL+e ++k ++
F13E6.2 6 EARIYLQDHRIPQLFEGLMTgLIYSRPADPLKFLEESIVKIRS 48
ADK: domain 1 of 3, from 174 to 182: score -0.6, E = 1.3e+02
RF xxxxxxxxx
*->llGpPGaGK<-*
++G+PG GK
F13E6.2 174 FMGGPGGGK 182
DHHA1: domain 1 of 1, from 168 to 200: score 5.3, E = 4.1
*->dkpvvvfa..eedgkikvSaRsskgldvkG.vk<-*
d p+++f ++ ++gk + aR+ ++l ++G v+
F13E6.2 168 DVPIILFMggPGGGKTRHAARVADSLADNGlVH 200
ADK: domain 2 of 3, from 230 to 293: score 21.6, E = 8e-05
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
*->kGeLVPDevvvglvkerleqnndcknGFLLDGFPRtvpQAeaLeemL
+GeL+P ++ + l+k ++ + GF L G+PR+ Q e +e+
F13E6.2 230 RGELIPNQLALTLLKAEMGRH-PDAMGFFLEGYPREARQVEDFER-- 273
RF xxxxxxxxxxxxxxxxxxxxxx
eeagikldaVleldVpdevLve<-*
+ + ++ l ld ++ +L e
F13E6.2 274 --QVKSVNMALILDYDERTLRE 293
MR_MLE: domain 1 of 1, from 299 to 313: score 2.4, E = 9.3
*->GLGveldekeirkya<-*
GLG+e+ ++i +++
F13E6.2 299 GLGMEIIDQKIKEFK 313
ADK: domain 3 of 3, from 518 to 677: score 19.4, E = 0.00034
RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxx xxxxxxxxx
*->llGpPGaGKGTQaekIvkky.givHLSTGDlLRaev..ksgTelGke
+lG+PG+ K +++I++ky+g++ LS GD+LR+ +++ ++ e+ +
F13E6.2 518 VLGAPGSQKNDISRRIAQKYdGFTMLSMGDILRKKInnEKNDEMWDK 564
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
aKeyMdkGeLVPDevvvglvkerleqnndcknGFLLDGFPRtvpQAeaLe
+ + M++G+ +P + + e+l + + G+ + G+P +Q Le
F13E6.2 565 VSKKMNNGDPIPTKMCRTVLYEELHSRGTSNWGYVIEGYPKSPDQLVDLE 614
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxx
emLeeagikldaVleldVpdevLveRltg.........DneEtvkkRLet
+++d+ + +d+ ++ e + ++++++++++D ++v+ R e
F13E6.2 615 H----SLQRTDLAILIDCTEQFCLEVINKrnrenkrsdDDSDAVRSRMEY 660
RF xxxxxxxxxxxxxxxxx
YhkqTePvIdyYkkkgk<-*
++k+T P + kgk
F13E6.2 661 FKKNTLPMLKTLDDKGK 677