hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F13B12.4
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Query:  F13B12.4  CE05602   cysteine synthase like status:Partially_confirmed TR:Q19374 protein_id:CAA94589.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
PALP     Pyridoxal-phosphate dependent enzyme           187.3    2.5e-54   1
OspD     Borrelia outer surface protein D (OspD)          5.4        1.4   1
DUF458   Protein of unknown function (DUF458)             5.3        4.5   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF458     1/1      11    23 ..   152   164 .]     5.3      4.5
OspD       1/1       1    41 [.     1    53 [.     5.4      1.4
PALP       1/1      53   377 ..     1   375 []   187.3  2.5e-54

Alignments of top-scoring domains:
DUF458: domain 1 of 1, from 11 to 23: score 5.3, E = 4.5
                   *->SyAAsciAdkiTK<-*
                      S+ Asc A  iTK
    F13B12.4    11    SISASCLAEDITK    23

OspD: domain 1 of 1, from 1 to 41: score 5.4, E = 1.4
                   *->mKKLiKiLLlsLFLLLsisCvhdkqelssksnLnnqkgylDnEGvns
                          +K+LLl+LFL +s sC  +     s s +        nE +
    F13B12.4     1    ----MKLLLLALFLSISASCLAEDITKISESRI-------PNEDAVP 36

                   kdYEsK<-*
                    dYE+K
    F13B12.4    37 -DYEAK    41

PALP: domain 1 of 1, from 53 to 377: score 187.3, E = 2.5e-54
                   *->vtelignTPLvrlnrlskelgeglganaaveiylKlEdlnGPtGSfK
                        +  g+TP+++   ++       +a    +i++K E     t+  K
    F13B12.4    53    ERRKMGHTPMTKFSPPG-----FPNA----DIFFKNETAT-ATRTLK 89

                   DRglalnmillAeklgkkggivpgtvqveskttiiEptsGNtGialAlaa
                   +R  a++++l+A     +g+++        ++ ++++tsGNtG+a A+++
    F13B12.4    90 HRF-AWALLLWAIT---EGKVTSK------TSAVYDSTSGNTGSAEAYMC 129

                   allGlkciivMPatdtsreKraqlralGAeaivvpvagGgsddladaiak
                    l +++ + v+ ++  ++eK++q++++G+++i+vpva  ++   ++  +k
    F13B12.4   130 TLVNVPYYAVVADN-LEKEKVKQIESFGGKIIKVPVAL-RNAKAKEFADK 177

                   AeelaeenpentayllnqaaGpfdnPanpeiagqktigpEIweQlggkei
                      +  +  +n a  +      f+    +  +  + ++ EI  Ql+  ++
    F13B12.4   178 NHGFYMNQFGN-AEKAEE----FHESGDFY-FESTNVYHEIIVQLKKDKE 221

                   sigrlpDavvapvGgGGtitGiarylKelnpngkidvlelpvkvigVEPe
                   +i++ pD++v ++G+GGti+ ++ry+ ++            +kv+  + +
    F13B12.4   222 QIVKIPDYFVHSAGTGGTISSVGRYVARYGAP---------TKVVLSDSQ 262

                   gsavlsgslkatltlagkpGplhgrdskyllqDepvtlpetksigiGlgv
                    s ++   +++++t  +++G               +++ ++++ giG+g+
    F13B12.4   263 YSLFYDYVIGHKFT--NQSGA--------------GIWTPPGIAGIGYGY 296

                   prvgefvppildellv.rdevvtVtdeealeaarlLareEGifvgpssga
                    +   + +++ + + + + e+++ +d  +++++r + +e G+ vgps+ +
    F13B12.4   297 DIEPVWYGETTSLTRNvIHEAMKMPDIASVATMR-ILDEKGYNVGPSTSL 345

                   avaaalklakegkk...pegkgkriVvilsgg<-*
                   ++   l  a ++k+++++++   +iV++ ++
    F13B12.4   346 NFLVSLYKAYQNKArksAIKHRLTIVTLACDP    377

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